Characterization of novel small RNAs (sRNAs) contributing to the desiccation response of Salmonella enterica serovar Typhimurium

Regulation Mechanism of Long Non-coding RNA in Plant Response to Stress

(2018) Xi Sun et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Biological and regulatory roles of acid-induced small RNA RyeC in Salmonella Typhimurium

(2018) Daniel Ryan et al.   BIOCHIMIE

Desiccation: An environmental and food industry stress that bacteria commonly face

(2018) Julia Esbelin et al.   FOOD MICROBIOLOGY

Bacterial Noncoding RNAs Excised from within Protein-Coding Transcripts

(2018) Daniel Dar et al.   mBio

Multiple Functions of Long Non-Coding RNAs in Oxidative Stress, DNA Damage Response and Cancer Progression

(2017) Sadra Samavarchi Tehrani et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Angiosperm Plant Desiccation Tolerance: Hints from Transcriptomics and Genome Sequencing

(2017) Valentino Giarola et al.   TRENDS IN PLANT SCIENCE

Global Screening of Salmonella enterica Serovar Typhimurium Genes for Desiccation Survival

(2017) Rabindra K. Mandal et al.   Frontiers in Microbiology

Heatmapper: web-enabled heat mapping for all

(2016) Sasha Babicki et al.   NUCLEIC ACIDS RESEARCH

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

(2016) Alexandre Smirnov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA: Small RNA mediators of the brains genomic response to environmental stress

(2016) Sharon L. Hollins et al.   PROGRESS IN NEUROBIOLOGY

Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium

(2016) Shivam V. Amin et al.   RNA Biology

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium

(2016) Aoife M. Colgan et al.   PLoS Genetics

Sources and Risk Factors for Contamination, Survival, Persistence, and Heat Resistance of Salmonella in Low-Moisture Foods

(2016) RICHARD PODOLAK et al.   JOURNAL OF FOOD PROTECTION

sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria

(2015) Jiang Wang et al.   NUCLEIC ACIDS RESEARCH

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

(2015) Shabarinath Srikumar et al.   PLoS Pathogens

6S RNA, a Global Regulator of Transcription inEscherichia coli,Bacillus subtilis, and Beyond

(2014) Amy T. Cavanagh et al.   Annual Review of Microbiology

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Expanding the RpoS/σS-Network by RNA Sequencing and Identification of σS-Controlled Small RNAs in Salmonella

(2014) Corinne Lévi-Meyrueis et al.   PLoS One

ProP Is Required for the Survival of Desiccated Salmonella enterica Serovar Typhimurium Cells on a Stainless Steel Surface

(2013) S. Finn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective

(2013) P. P. Amaral et al.   Briefings in Functional Genomics

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

Expanding control in bacteria: interplay between small RNAs and transcriptional regulators to control gene expression

(2013) Pierre Mandin et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial sRNAs: Regulation in stress

(2013) Chee-Hock Hoe et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response

(2013) Iván L. Calderón et al.   RESEARCH IN MICROBIOLOGY

Global Transcriptional Analysis of Dehydrated Salmonella enterica Serovar Typhimurium

(2012) Nadia Gruzdev et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Genetic and phenotypic characterization of the RyhB regulon in Salmonella Typhimurium

(2012) Jeong Nam Kim et al.   MICROBIOLOGICAL RESEARCH

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

sRNAs and the virulence ofSalmonella entericaserovar Typhimurium

(2012) Magali Hébrard et al.   RNA Biology

Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil

(2011) Xiangyu Deng et al.   FOOD MICROBIOLOGY

Resistance and survival strategies of Salmonella enterica to environmental stresses

(2011) Michael P. Spector et al.   FOOD RESEARCH INTERNATIONAL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

(2010) Jan-Philip Schlüter et al.   BMC GENOMICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH