Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio parahaemolyticus

Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus

(2018) Zhihong Zheng et al.   BMC GENOMICS

Hemocyanin of Litopenaeus vannamei agglutinates Vibrio parahaemolyticus AHPND (VP AHPND ) and neutralizes its toxin

(2018) Pakpoom Boonchuen et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Differentially expressed genes in hemocytes of Litopenaeus vannamei challenged with Vibrio parahaemolyticus AHPND (VP AHPND ) and VP AHPND toxin

(2018) Benedict A. Maralit et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative transcriptomic analysis of shrimp hemocytes in response to acute hepatopancreas necrosis disease (AHPND) causing Vibrio parahemolyticus infection

(2018) Zhihong Zheng et al.   FISH & SHELLFISH IMMUNOLOGY

Sex determination and differentiation genes in a functional hermaphrodite scallop, Nodipecten subnodosus

(2018) Pavel Galindo-Torres et al.   Marine Genomics

Phosphoenolpyruvate carboxykinase cytosolic and mitochondrial isoforms are expressed and active during hypoxia in the white shrimp Litopenaeus vannamei

(2018) Carlos A. Reyes-Ramos et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Transcriptome analysis of the hepatopancreas in Exopalaemon carinicauda infected with an AHPND-causing strain of Vibrio parahaemolyticus

(2017) Qianqian Ge et al.   FISH & SHELLFISH IMMUNOLOGY

The spread of Vibrio parahaemolyticus in tissues of the Pacific white shrimp Litopenaeus vannamei analyzed by PCR and histopathology

(2017) Umaporn Khimmakthong et al.   MICROBIAL PATHOGENESIS

Shrimp AHPND-causing plasmids encoding the PirAB toxins as mediated by pirAB-Tn903 are prevalent in various Vibrio species

(2017) Jinzhou Xiao et al.   Scientific Reports

Differentially expressed transcripts in stomach of Penaeus monodon in response to AHPND infection

(2016) Wipasiri Soonthornchai et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Photorhabdus insect-related (Pir) toxin-like genes in a plasmid of Vibrio parahaemolyticus, the causative agent of acute hepatopancreatic necrosis disease (AHPND) of shrimp

(2015) JE Han et al.   DISEASES OF AQUATIC ORGANISMS

Pathogenesis of acute hepatopancreatic necrosis disease (AHPND) in shrimp

(2015) Hung-Chiao Lai et al.   FISH & SHELLFISH IMMUNOLOGY

Detection of acute hepatopancreatic necrosis disease strain of Vibrio parahaemolyticus using loop-mediated isothermal amplification

(2015) K Koiwai et al.   JOURNAL OF FISH DISEASES

RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection

(2015) Rama Rao et al.   Gut Pathogens

Field and Experimental Evidence of Vibrio parahaemolyticus as the Causative Agent of Acute Hepatopancreatic Necrosis Disease of Cultured Shrimp (Litopenaeus vannamei) in Northwestern Mexico

(2014) Sonia A. Soto-Rodriguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Variation in Vibrio parahaemolyticus isolates from a single Thai shrimp farm experiencing an outbreak of acute hepatopancreatic necrosis disease (AHPND)

(2014) Jyoti Joshi et al.   AQUACULTURE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The invertebrate midintestinal gland (“hepatopancreas”) is an evolutionary forerunner in the integration of immunity and metabolism

(2014) Tamás Rőszer   CELL AND TISSUE RESEARCH

Diverse immune functions of hemocyanins

(2014) Christopher J. Coates et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Detection of acute hepatopancreatic necrosis disease (AHPND) in Mexico

(2014) L Nunan et al.   DISEASES OF AQUATIC ORGANISMS

iTRAQ-based proteomic study of the effects of Spiroplasma eriocheiris on Chinese mitten crab Eriocheir sinensis hemocytes

(2014) Qingguo Meng et al.   FISH & SHELLFISH IMMUNOLOGY

Early Mortality Syndrome Outbreaks: A Microbial Management Issue in Shrimp Farming?

(2014) Peter De Schryver et al.   PLoS Pathogens

Effect of hypercapnic hypoxia and bacterial infection (Vibrio campbellii) on protein synthesis rates in the Pacific whiteleg shrimp, Litopenaeus vannamei

(2013) Kristin M. Hardy et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Determination of the infectious nature of the agent of acute hepatopancreatic necrosis syndrome affecting penaeid shrimp

(2013) L Tran et al.   DISEASES OF AQUATIC ORGANISMS

cDNA cloning, characterization and expression analysis of peroxiredoxin 5 gene in the ridgetail white prawn Exopalaemon carinicauda

(2013) Yafei Duan et al.   MOLECULAR BIOLOGY REPORTS

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

(2012) John H Morris et al.   BMC BIOINFORMATICS

Bleach gel: A simple agarose gel for analyzing RNA quality

(2012) Patrick S. Aranda et al.   ELECTROPHORESIS

Discovery of immune molecules and their crucial functions in shrimp immunity

(2012) Anchalee Tassanakajon et al.   FISH & SHELLFISH IMMUNOLOGY

Historic emergence, impact and current status of shrimp pathogens in Asia

(2012) Timothy W. Flegel   JOURNAL OF INVERTEBRATE PATHOLOGY

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

(2012) Pierre De Wit et al.   Molecular Ecology Resources

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Shrimp Alpha-2-Macroglobulin Prevents the Bacterial Escape by Inhibiting Fibrinolysis of Blood Clots

(2012) Vorrapon Chaikeeratisak et al.   PLoS One

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Reactive oxygen system plays an important role in shrimp Litopenaeus vannamei defense against ­Vibrio parahaemolyticus and WSSV infection

(2011) PF Ji et al.   DISEASES OF AQUATIC ORGANISMS

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

GLay: community structure analysis of biological networks

(2010) G. Su et al.   BIOINFORMATICS

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Increased bacterial load in shrimp hemolymph in the absence of prophenoloxidase

(2009) Fernand F. Fagutao et al.   FEBS Journal

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Abundantly expressed transcripts in the lymphoid organ of the black tiger shrimp, Penaeus monodon, and their implication in immune function

(2008) S PONGSOMBOON et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular cloning and expression analysis of chymotrypsin-like serine protease from the Chinese shrimp, Fenneropenaeus chinensis

(2008) X SHI et al.   FISH & SHELLFISH IMMUNOLOGY

Detection of Vibrio parahaemolyticus in tropical shellfish by SYBR green real-time PCR and evaluation of three enrichment media

(2008) Anuj Tyagi et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY