标题
High-resolution 13C metabolic flux analysis
作者
关键词
-
出版物
Nature Protocols
Volume 14, Issue 10, Pages 2856-2877
出版商
Springer Science and Business Media LLC
发表日期
2019-08-31
DOI
10.1038/s41596-019-0204-0
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
- (2019) Laurent Heirendt et al. Nature Protocols
- Reverse engineering the cancer metabolic network using flux analysis to understand drivers of human disease
- (2018) Mehmet G. Badur et al. METABOLIC ENGINEERING
- Hexokinase-2 depletion inhibits glycolysis and induces oxidative phosphorylation in hepatocellular carcinoma and sensitizes to metformin
- (2018) Dannielle DeWaal et al. Nature Communications
- Metabolism in dense microbial colonies: 13C metabolic flux analysis of E. coli grown on agar identifies two distinct cell populations with acetate cross-feeding
- (2018) Eric Wolfsberg et al. METABOLIC ENGINEERING
- Comprehensive analysis of glucose and xylose metabolism in Escherichia coli under aerobic and anaerobic conditions by 13 C metabolic flux analysis
- (2017) Jacqueline E. Gonzalez et al. METABOLIC ENGINEERING
- Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions
- (2017) Lian He et al. METABOLIC ENGINEERING
- Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring
- (2017) Christopher P. Long et al. METABOLIC ENGINEERING
- Metabolism of the fast-growing bacterium Vibrio natriegens elucidated by 13 C metabolic flux analysis
- (2017) Christopher P. Long et al. METABOLIC ENGINEERING
- 13 C metabolic flux analysis of three divergent extremely thermophilic bacteria: Geobacillus sp. LC300, Thermus thermophilus HB8, and Rhodothermus marinus DSM 4252
- (2017) Lauren T. Cordova et al. METABOLIC ENGINEERING
- Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme inEscherichia coli
- (2017) Christopher P. Long et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enzyme I facilitates reverse flux from pyruvate to phosphoenolpyruvate in Escherichia coli
- (2017) Christopher P. Long et al. Nature Communications
- Acetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway
- (2017) Brice Enjalbert et al. Scientific Reports
- Measuring the Composition and Stable-Isotope Labeling of Algal Biomass Carbohydrates via Gas Chromatography/Mass Spectrometry
- (2016) Brian O. McConnell et al. ANALYTICAL CHEMISTRY
- Evidence for transketolase-like TKTL1 flux in CHO cells based on parallel labeling experiments and 13 C-metabolic flux analysis
- (2016) Woo Suk Ahn et al. METABOLIC ENGINEERING
- Characterization of physiological responses to 22 gene knockouts in Escherichia coli central carbon metabolism
- (2016) Christopher P. Long et al. METABOLIC ENGINEERING
- Optimal tracers for parallel labeling experiments and 13 C metabolic flux analysis: A new precision and synergy scoring system
- (2016) Scott B. Crown et al. METABOLIC ENGINEERING
- 13 C metabolic flux analysis of microbial and mammalian systems is enhanced with GC-MS measurements of glycogen and RNA labeling
- (2016) Christopher P. Long et al. METABOLIC ENGINEERING
- 13 C metabolic flux analysis of the extremely thermophilic, fast growing, xylose-utilizing Geobacillus strain LC300
- (2016) Lauren T. Cordova et al. METABOLIC ENGINEERING
- Co-utilization of glucose and xylose by evolved Thermus thermophilus LC113 strain elucidated by 13 C metabolic flux analysis and whole genome sequencing
- (2016) Lauren T. Cordova et al. METABOLIC ENGINEERING
- MID Max: LC–MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications
- (2015) Douglas McCloskey et al. ANALYTICAL CHEMISTRY
- Rapid metabolic analysis of Rhodococcus opacus PD630 via parallel 13 C-metabolite fingerprinting
- (2015) Whitney D. Hollinshead et al. BIOTECHNOLOGY AND BIOENGINEERING
- A roadmap for interpreting 13 C metabolite labeling patterns from cells
- (2015) Joerg M Buescher et al. CURRENT OPINION IN BIOTECHNOLOGY
- Parallel labeling experiments for pathway elucidation and 13 C metabolic flux analysis
- (2015) Maciek R Antoniewicz CURRENT OPINION IN BIOTECHNOLOGY
- Methods and advances in metabolic flux analysis: a mini-review
- (2015) Maciek R. Antoniewicz JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- 13 C-metabolic flux analysis of co-cultures: A novel approach
- (2015) Nikodimos A. Gebreselassie et al. METABOLIC ENGINEERING
- Integrated 13 C-metabolic flux analysis of 14 parallel labeling experiments in Escherichia coli
- (2015) Scott B. Crown et al. METABOLIC ENGINEERING
- 13C metabolic flux analysis at a genome-scale
- (2015) Saratram Gopalakrishnan et al. METABOLIC ENGINEERING
- A Method to Constrain Genome-Scale Models with 13C Labeling Data
- (2015) Héctor García Martín et al. PLoS Computational Biology
- Catabolism of Branched Chain Amino Acids Contributes Significantly to Synthesis of Odd-Chain and Even-Chain Fatty Acids in 3T3-L1 Adipocytes
- (2015) Scott B. Crown et al. PLoS One
- Quantifying Biomass Composition by Gas Chromatography/Mass Spectrometry
- (2014) Christopher P. Long et al. ANALYTICAL CHEMISTRY
- INCA: a computational platform for isotopically non-stationary metabolic flux analysis
- (2014) J. D. Young BIOINFORMATICS
- Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for 13 C metabolic flux analysis
- (2014) Jennifer Au et al. METABOLIC ENGINEERING
- Metabolic network reconstruction, growth characterization and 13C-metabolic flux analysis of the extremophile Thermus thermophilus HB8
- (2014) Aditi Swarup et al. METABOLIC ENGINEERING
- OpenMebius: An Open Source Software for Isotopically Nonstationary13C-Based Metabolic Flux Analysis
- (2014) Shuichi Kajihata et al. Biomed Research International
- Dynamic metabolic flux analysis—tools for probing transient states of metabolic networks
- (2013) Maciek R Antoniewicz CURRENT OPINION IN BIOTECHNOLOGY
- 13C metabolic flux analysis: optimal design of isotopic labeling experiments
- (2013) Maciek R Antoniewicz CURRENT OPINION IN BIOTECHNOLOGY
- 13CFLUX2—high-performance software suite for 13C-metabolic flux analysis
- (2012) Michael Weitzel et al. BIOINFORMATICS
- Tandem mass spectrometry for measuring stable-isotope labeling
- (2012) Maciek R Antoniewicz CURRENT OPINION IN BIOTECHNOLOGY
- Parallel labeling experiments with [U-13C]glucose validate E. coli metabolic network model for 13C metabolic flux analysis
- (2012) Robert W. Leighty et al. METABOLIC ENGINEERING
- Measuring Deuterium Enrichment of Glucose Hydrogen Atoms by Gas Chromatography/Mass Spectrometry
- (2011) Maciek R. Antoniewicz et al. ANALYTICAL CHEMISTRY
- Dynamic metabolic flux analysis (DMFA): A framework for determining fluxes at metabolic non-steady state
- (2011) Robert W. Leighty et al. METABOLIC ENGINEERING
- Selection of tracers for 13C-Metabolic Flux Analysis using Elementary Metabolite Units (EMU) basis vector methodology
- (2011) Scott B. Crown et al. METABOLIC ENGINEERING
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2011) R. Caspi et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry
- (2010) Hilal Taymaz-Nikerel et al. BIOTECHNOLOGY AND BIOENGINEERING
- Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis
- (2010) Scott B. Crown et al. Biotechnology Journal
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Evaluation of 13C isotopic tracers for metabolic flux analysis in mammalian cells
- (2009) Christian M. Metallo et al. JOURNAL OF BIOTECHNOLOGY
- Metabolic flux analysis and pharmaceutical production
- (2009) Brett A. Boghigian et al. METABOLIC ENGINEERING
- Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism
- (2009) Kenji Nakahigashi et al. Molecular Systems Biology
- 13C-based metabolic flux analysis
- (2009) Nicola Zamboni et al. Nature Protocols
- Quantifying Reductive Carboxylation Flux of Glutamine to Lipid in a Brown Adipocyte Cell Line
- (2008) Hyuntae Yoo et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Kinetic flux profiling for quantitation of cellular metabolic fluxes
- (2008) Jie Yuan et al. Nature Protocols
- An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
- (2007) Jamey D. Young et al. BIOTECHNOLOGY AND BIOENGINEERING
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