Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage
出版年份 2019 全文链接
标题
Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage
作者
关键词
-
出版物
NATURE NEUROSCIENCE
Volume 22, Issue 9, Pages 1521-1532
出版商
Springer Science and Business Media LLC
发表日期
2019-08-28
DOI
10.1038/s41593-019-0461-9
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Identification of common genetic risk variants for autism spectrum disorder
- (2019) Jakob Grove et al. NATURE GENETICS
- Genome-wide DNA methylation profiling identifies convergent molecular signatures associated with idiopathic and syndromic autism in post-mortem human brain tissue
- (2019) Chloe C Y Wong et al. HUMAN MOLECULAR GENETICS
- Monoallelic Gene Expression in Mammals
- (2016) Andrew Chess Annual Review of Genetics
- Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data
- (2016) E. Y. Kang et al. GENETICS
- Genome-wide changes in lncRNA, splicing and regional gene expression patterns in autism
- (2016) Neelroop N. Parikshak et al. NATURE
- Genome-wide, integrative analysis implicates microRNA dysregulation in autism spectrum disorder
- (2016) Ye E Wu et al. NATURE NEUROSCIENCE
- Gene hunting in autism spectrum disorder: on the path to precision medicine
- (2015) Daniel H Geschwind et al. LANCET NEUROLOGY
- An integrated map of structural variation in 2,504 human genomes
- (2015) Peter H. Sudmant et al. NATURE
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci
- (2015) Stephan J. Sanders et al. NEURON
- dbMAE: the database of autosomal monoallelic expression
- (2015) Virginia Savova et al. NUCLEIC ACIDS RESEARCH
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- MAGMA: Generalized Gene-Set Analysis of GWAS Data
- (2015) Christiaan A. de Leeuw et al. PLoS Computational Biology
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- minimac2: faster genotype imputation
- (2014) Christian Fuchsberger et al. BIOINFORMATICS
- Allelic expression analysis in the brain suggests a role for heterogeneous insults affecting epigenetic processes in autism spectrum disorders
- (2014) Eyal Ben-David et al. HUMAN MOLECULAR GENETICS
- An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
- (2014) Y. Zhang et al. JOURNAL OF NEUROSCIENCE
- The contribution of de novo coding mutations to autism spectrum disorder
- (2014) Ivan Iossifov et al. NATURE
- Monoallelic expression of the humanFOXP2speech gene
- (2014) Abidemi A. Adegbola et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
- (2014) Sebastien M. Weyn-Vanhentenryck et al. Cell Reports
- Allelic Expression of Deleterious Protein-Coding Variants across Human Tissues
- (2014) Kimberly R. Kukurba et al. PLoS Genetics
- DNA methylation analysis of the autistic brain reveals multiple dysregulated biological pathways
- (2014) S Nardone et al. Translational Psychiatry
- Altered Gamma-Aminobutyric Acid Type B Receptor Subunit 1 Splicing In Alcoholics
- (2013) Changhoon Lee et al. BIOLOGICAL PSYCHIATRY
- Integrative Functional Genomic Analyses Implicate Specific Molecular Pathways and Circuits in Autism
- (2013) Neelroop N. Parikshak et al. CELL
- Copy number variation-based polymorphism in a new pseudoautosomal region 3 (PAR3) of a human X-chromosome-transposed region (XTR) in the Y chromosome
- (2013) Avinash M. Veerappa et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis
- (2013) LANCET
- Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data
- (2013) Emma M. Quinn et al. PLoS One
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Global Prevalence of Autism and Other Pervasive Developmental Disorders
- (2012) Mayada Elsabbagh et al. Autism Research
- Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
- (2012) Bryan Howie et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Critical Evaluation of Imprinted Gene Expression by RNA–Seq: A New Perspective
- (2012) Brian DeVeale et al. PLoS Genetics
- FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
- (2011) Jennifer C. Darnell et al. CELL
- Neuron-specific impairment of inter-chromosomal pairing and transcription in a novel model of human 15q-duplication syndrome
- (2011) Makiko Meguro-Horike et al. HUMAN MOLECULAR GENETICS
- Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability
- (2011) Neelanjan Mukherjee et al. MOLECULAR CELL
- Imprinted DLK1-DIO3 region of 14q32 defines a schizophrenia-associated miRNA signature in peripheral blood mononuclear cells
- (2011) E Gardiner et al. MOLECULAR PSYCHIATRY
- Transcriptomic analysis of autistic brain reveals convergent molecular pathology
- (2011) Irina Voineagu et al. NATURE
- miRNA Expression in Colon Polyps Provides Evidence for a Multihit Model of Colon Cancer
- (2011) Ann L. Oberg et al. PLoS One
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Increased copy number for methylated maternal 15q duplications leads to changes in gene and protein expression in human cortical samples
- (2011) Haley A Scoles et al. Molecular Autism
- PLEXY: efficient target prediction for box C/D snoRNAs
- (2010) Stephanie Kehr et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Allele-specific DNA methylation: beyond imprinting
- (2010) B. Tycko HUMAN MOLECULAR GENETICS
- Understanding mechanisms underlying human gene expression variation with RNA sequencing
- (2010) Joseph K. Pickrell et al. NATURE
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sex-Specific Parent-of-Origin Allelic Expression in the Mouse Brain
- (2010) C. Gregg et al. SCIENCE
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
- (2009) Jacob F. Degner et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
- (2009) Eran Eden et al. BMC BIOINFORMATICS
- Genetic predisposition to human disease: allele-specific expression and low-penetrance regulatory loci
- (2009) A de la Chapelle ONCOGENE
- BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
- (2008) Tim Hulsen et al. BMC GENOMICS
- Copy-number variations associated with neuropsychiatric conditions
- (2008) Edwin H. Cook Jr et al. NATURE
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions
- (2007) Peter S. Bazeley et al. GENE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started