Evaluation of genomic selection methods for predicting fiber quality traits in Upland cotton

Historical Datasets Support Genomic Selection Models for the Prediction of Cotton Fiber Quality Phenotypes Across Multiple Environments

(2018) Washington Gapare et al.   G3-Genes Genomes Genetics

Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.)

(2018) Gregory N. Thyssen et al.   THEORETICAL AND APPLIED GENETICS

Searching for an Accurate Marker-Based Prediction of an Individual Quantitative Trait in Molecular Plant Breeding

(2017) Yong-Bi Fu et al.   Frontiers in Plant Science

An experimental validation of genomic selection in octoploid strawberry

(2017) Salvador A Gezan et al.   Horticulture Research

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2017) Elliot L. Heffner et al.   Plant Genome

A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

(2016) Md Sariful Islam et al.   BMC GENOMICS

Genome-wide association analysis of seedling root development in maize (Zea mays L.)

(2015) Jordon Pace et al.   BMC GENOMICS

Perspectives for Genomic Selection Applications and Research in Plants

(2015) Nicolas Heslot et al.   CROP SCIENCE

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

MAGIC populations in crops: current status and future prospects

(2015) B. Emma Huang et al.   THEORETICAL AND APPLIED GENETICS

Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton

(2015) M. Sariful Islam et al.   Plant Genome

Genomic Selection for Predicting Head Blight Resistance in a Wheat Breeding Program

(2015) Marcio P. Arruda et al.   Plant Genome

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.)

(2014) David D Fang et al.   BMC GENOMICS

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength

(2014) Md. S. Islam et al.   MOLECULAR BREEDING

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures

(2014) Réka Howard et al.   G3-Genes Genomes Genetics

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries

(2013) David D. Fang et al.   EUPHYTICA

Priors in Whole-Genome Regression: The Bayesian Alphabet Returns

(2013) D. Gianola   GENETICS

Genome-Wide Prediction of Traits with Different Genetic Architecture Through Efficient Variable Selection

(2013) V. Wimmer et al.   GENETICS

Variations and Transmission of QTL Alleles for Yield and Fiber Qualities in Upland Cotton Cultivars Developed in China

(2013) Tianzhen Zhang et al.   PLoS One

Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity

(2013) Nicolas Heslot et al.   PLoS One

Experimental assessment of the accuracy of genomic selection in sugarcane

(2013) M. Gouy et al.   THEORETICAL AND APPLIED GENETICS

Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy

(2013) Jessica E. Rutkoski et al.   G3-Genes Genomes Genetics

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Whole-genome strategies for marker-assisted plant breeding

(2012) Yunbi Xu et al.   MOLECULAR BREEDING

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

Effectiveness of Genomic Prediction of Maize Hybrid Performance in Different Breeding Populations and Environments

(2012) Vanessa S. Windhausen et al.   G3-Genes Genomes Genetics

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Prediction of body mass index in mice using dense molecular markers and a regularized neural network

(2011) HAYRETTIN OKUT et al.   Genetics Research

Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.)

(2011) Ke Zhang et al.   MOLECULAR BREEDING

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population

(2010) Jean-Marc Lacape et al.   BMC PLANT BIOLOGY

Genomic selection for durable stem rust resistance in wheat

(2010) Jessica E. Rutkoski et al.   EUPHYTICA

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

LASSO with cross-validation for genomic selection

(2010) M. GRAZIANO USAI et al.   Genetics Research

Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids

(2009) Johnie N. Jenkins et al.   EUPHYTICA

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE