Comparative metagenomics of microbial mats from hypersaline lakes at Rottnest Island (WA, Australia), advancing our understanding of the effect of mat community and functional genes on microbialite accretion

Seasonal Variability of Mineral Formation in Microbial Mats Subjected to Drying and Wetting Cycles in Alkaline and Hypersaline Sedimentary Environments

(2018) Ó. Cabestrero et al.   AQUATIC GEOCHEMISTRY

Microbial mat ecosystems: Structure types, functional diversity, and biotechnological application

(2018) Cristina M. Prieto-Barajas et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

Tracing the fate of steroids through a hypersaline microbial mat (Kiritimati, Kiribati/Central Pacific)

(2018) Y. Shen et al.   Geobiology

Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes

(2018) Hon Lun Wong et al.   ISME Journal

Effect of light wavelength on hot spring microbial mat biodiversity

(2018) Akifumi Nishida et al.   PLoS One

Possible nitrogen fertilization of the early Earth Ocean by microbial continental ecosystems

(2018) Christophe Thomazo et al.   Nature Communications

Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean)

(2018) Emmanuelle Gérard et al.   Frontiers in Microbiology

Characterization of Pustular Mats and Related Rivularia-Rich Laminations in Oncoids From the Laguna Negra Lake (Argentina)

(2018) Estela C. Mlewski et al.   Frontiers in Microbiology

Viral Communities of Shark Bay Modern Stromatolites

(2018) Richard Allen White III et al.   Frontiers in Microbiology

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia

(2018) Joany Babilonia et al.   Frontiers in Microbiology

Environmental and Biological Influences on Carbonate Precipitation Within Hot Spring Microbial Mats in Little Hot Creek, CA

(2018) Dylan T. Wilmeth et al.   Frontiers in Microbiology

Bioinformatic, phylogenetic, and chemical analysis of the UV-absorbing compounds scytonemin and mycosporine-like amino acids from the microbial mat communities of Shark Bay, Australia

(2018) Paul M. D'Agostino et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes

(2018) Anukriti Sharma et al.   Frontiers in Microbiology

Functional shifts in microbial mats recapitulate early Earth metabolic transitions

(2018) Ana Gutiérrez-Preciado et al.   Nature Ecology & Evolution

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Exploring Components of the CO 2 -Concentrating Mechanism in Alkaliphilic Cyanobacteria Through Genome-Based Analysis

(2017) Amornpan Klanchui et al.   Computational and Structural Biotechnology Journal

Prokaryotic diversity and biogeochemical characteristics of benthic microbial ecosystems at La Brava, a hypersaline lake at Salar de Atacama, Chile

(2017) Maria Eugenia Farias et al.   PLoS One

Dynamics of archaea at fine spatial scales in Shark Bay mat microbiomes

(2017) Hon Lun Wong et al.   Scientific Reports

Microbial diversity in the hypersaline Lake Meyghan, Iran

(2017) Ali Naghoni et al.   Scientific Reports

In SituHydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle

(2016) Niels Peter Revsbech et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biodiversity of Living, Non-marine, Thrombolites of Lake Clifton, Western Australia

(2016) Deirdre B. Gleeson et al.   GEOMICROBIOLOGY JOURNAL

Brine evolution in two inland evaporative environments: influence of microbial mats in mineral precipitation

(2016) Óscar Cabestrero et al.   JOURNAL OF PALEOLIMNOLOGY

Rapid emergence of life shown by discovery of 3,700-million-year-old microbial structures

(2016) Allen P. Nutman et al.   NATURE

Cyanobacterial Diazotrophy and Earth’s Delayed Oxygenation

(2016) Stephanie L. Olson et al.   Frontiers in Microbiology

Microbial Mat Compositional and Functional Sensitivity to Environmental Disturbance

(2016) Eva C. Preisner et al.   Frontiers in Microbiology

Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile

(2016) Ana B. Fernandez et al.   Frontiers in Microbiology

Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics

(2016) John G. Warden et al.   Frontiers in Microbiology

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community

(2016) Richard Allen White et al.   Frontiers in Microbiology

New multi-scale perspectives on the stromatolites of Shark Bay, Western Australia

(2016) E. P. Suosaari et al.   Scientific Reports

Microbial and diagenetic steps leading to the mineralisation of Great Salt Lake microbialites

(2016) Aurélie Pace et al.   Scientific Reports

Patterns and Determinants of Halophilic Archaea (Class Halobacteria) Diversity in Tunisian Endorheic Salt Lakes and Sebkhet Systems

(2015) Afef Najjari et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake

(2015) Anne D. Jungblut et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BFC: correcting Illumina sequencing errors

(2015) Heng Li   BIOINFORMATICS

Characterization of the stromatolite microbiome from Little Darby Island, The Bahamas using predictive and whole shotgun metagenomic analysis

(2015) Giorgio Casaburi et al.   ENVIRONMENTAL MICROBIOLOGY

The role of biology in planetary evolution: cyanobacterial primary production in low-oxygen Proterozoic oceans

(2015) Trinity L. Hamilton et al.   ENVIRONMENTAL MICROBIOLOGY

Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics

(2015) Tomàs Llorens-Marès et al.   ISME Journal

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics

(2015) Rendy Ruvindy et al.   ISME Journal

Lipid Biomarker and Isotopic Study of Community Distribution and Biomarker Preservation in a Laminated Microbial Mat from Shark Bay, Western Australia

(2015) Anais Pagès et al.   MICROBIAL ECOLOGY

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

(2015) Hon Lun Wong et al.   Scientific Reports

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential

(2015) Richard Allen White et al.   Frontiers in Microbiology

Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance

(2015) Silvia Pajares et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Links between sulphur oxidation and sulphur-oxidising bacteria abundance and diversity in soil microcosms based onsoxBfunctional gene analysis

(2014) Maria Tourna et al.   FEMS MICROBIOLOGY ECOLOGY

Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada

(2014) J. A. Russell et al.   Geobiology

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Inactivation of Ca2+/H+Exchanger in Synechocystis sp. Strain PCC 6803 Promotes Cyanobacterial Calcification by Upregulating CO2-Concentrating Mechanisms

(2013) Hai-Bo Jiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbially Induced Sedimentary Structures Recording an Ancient Ecosystem in the ca. 3.48 Billion-Year-Old Dresser Formation, Pilbara, Western Australia

(2013) Nora Noffke et al.   ASTROBIOLOGY

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs

(2013) Haiyin Chen-Harris et al.   BMC GENOMICS

Active eukaryotes in microbialites from Highborne Cay, Bahamas and Hamelin Pool (Shark Bay), Australia

(2013) Virginia P Edgcomb et al.   ISME Journal

Metabolic potential of lithifying cyanobacteria-dominated thrombolitic mats

(2013) Jennifer M. Mobberley et al.   PHOTOSYNTHESIS RESEARCH

Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific

(2013) Dominik Schneider et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Microbial mats: an ecological niche for fungi

(2013) Sharon A. Cantrell et al.   Frontiers in Microbiology

Comparative Metagenomics of Two Microbial Mats at Cuatro Ciénegas Basin I: Ancient Lessons on How to Cope with an Environment Under Severe Nutrient Stress

(2012) Mariana Peimbert et al.   ASTROBIOLOGY

Comparative Metagenomics of Two Microbial Mats at Cuatro Ciénegas Basin II: Community Structure and Composition in Oligotrophic Environments

(2012) Germán Bonilla-Rosso et al.   ASTROBIOLOGY

Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park

(2012) Charles Pepe-Ranney et al.   ENVIRONMENTAL MICROBIOLOGY

Inside the alkalinity engine: the role of electron donors in the organomineralization potential of sulfate-reducing bacteria

(2012) K. L. Gallagher et al.   Geobiology

Metagenomic and Metabolic Profiling of Nonlithifying and Lithifying Stromatolitic Mats of Highborne Cay, The Bahamas

(2012) Christina L. M. Khodadad et al.   PLoS One

Cyanobacteria as Biocatalysts for Carbonate Mineralization

(2012) Nina Kamennaya et al.   Minerals

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Calcium carbonate precipitation by anoxygenic phototrophic bacteria

(2011) Irina A. Bundeleva et al.   CHEMICAL GEOLOGY

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Microbially mediated carbonate precipitation in a hypersaline lake, Big Pond (Eleuthera, Bahamas)

(2010) CHRISTINA GLUNK et al.   SEDIMENTOLOGY

Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas

(2009) Jamie S Foster et al.   ISME Journal

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Comparative Characterization of the Microbial Diversities of an Artificial Microbialite Model and a Natural Stromatolite

(2008) S. A. Havemann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Processes of carbonate precipitation in modern microbial mats

(2008) Christophe Dupraz et al.   EARTH-SCIENCE REVIEWS

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY