Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Hydrogen-isotopic variability in fatty acids from Yellowstone National Park hot spring microbial communities

(2011) Magdalena R. Osburn et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Novel Microbial Diversity Retrieved by Autonomous Robotic Exploration of the World's Deepest Vertical Phreatic Sinkhole

(2010) Jason W. Sahl et al.   ASTROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

How Many Bootstrap Replicates Are Necessary?

(2010) Nicholas D. Pattengale et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain

(2010) Fernando Santos et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Bar-Coded Pyrosequencing Reveals Shared Bacterial Community Properties along the Temperature Gradients of Two Alkaline Hot Springs in Yellowstone National Park

(2009) S. R. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas

(2009) Laura K. Baumgartner et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas

(2009) Jamie S Foster et al.   ISME Journal

Ecological Specialization in a Spatially Structured Population of the Thermophilic Cyanobacterium Mastigocladus laminosus

(2008) S. R. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Characterization of the Microbial Diversities of an Artificial Microbialite Model and a Natural Stromatolite

(2008) S. A. Havemann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica

(2008) Karin Finsinger et al.   ENVIRONMENTAL MICROBIOLOGY

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay

(2008) Falicia Goh et al.   ISME Journal

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

(2008) Z. Liu et al.   NUCLEIC ACIDS RESEARCH

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Microbial processes forming daily lamination in a stromatolitic travertine

(2008) Chizuru Takashima et al.   SEDIMENTARY GEOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY