Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)
出版年份 2019 全文链接
标题
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)
作者
关键词
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出版物
ISME Journal
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-09-28
DOI
10.1038/s41396-019-0508-7
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Genetic Evidence for Two Carbon Fixation Pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in Symbiotic and Free-Living Bacteria
- (2019) Maxim Rubin-Blum et al. mSphere
- Chemosynthetic ectosymbionts associated with a shallow-water marine nematode
- (2019) Laure Bellec et al. Scientific Reports
- A short history of RubisCO: the rise and fall (?) of Nature's predominant CO 2 fixing enzyme
- (2018) Tobias J Erb et al. CURRENT OPINION IN BIOTECHNOLOGY
- Endosymbiont genomes yield clues of tubeworm success
- (2018) Yuanning Li et al. ISME Journal
- Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
- (2018) Manuel Kleiner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reversibility of citrate synthase allows autotrophic growth of a thermophilic bacterium
- (2018) Achim Mall et al. SCIENCE
- A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
- (2018) Takuro Nunoura et al. SCIENCE
- Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys
- (2018) Petra Pjevac et al. Frontiers in Microbiology
- Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
- (2018) David W. Waite et al. Frontiers in Microbiology
- Success of chemolithoautotrophic SUP05 and Sulfurimonas GD17 cells in pelagic Baltic Sea redox zones is facilitated by their lifestyles as K- and r -strategists
- (2017) Andreas Rogge et al. ENVIRONMENTAL MICROBIOLOGY
- Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents
- (2017) Dimitri V Meier et al. ISME Journal
- Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2fixation pathway
- (2017) Israel A. Figueroa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents
- (2017) Rika E. Anderson et al. Nature Communications
- Assessing species biomass contributions in microbial communities via metaproteomics
- (2017) Manuel Kleiner et al. Nature Communications
- Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
- (2017) David W. Waite et al. Frontiers in Microbiology
- Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps
- (2017) Maxim Rubin-Blum et al. Nature Microbiology
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- (2016) Niv Antonovsky et al. CELL
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- (2016) Dimitri Kalenitchenko et al. ISME Journal
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- (2016) PM Riekenberg et al. MARINE ECOLOGY PROGRESS SERIES
- Environmental Breviatea harbour mutualistic Arcobacter epibionts
- (2016) Emmo Hamann et al. NATURE
- A synthetic pathway for the fixation of carbon dioxide in vitro
- (2016) Thomas Schwander et al. SCIENCE
- A specific and widespread association between deep-seaBathymodiolusmussels and a novel family of Epsilonproteobacteria
- (2016) Adrien Assié et al. Environmental Microbiology Reports
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- (2016) Matthias Winkel et al. Frontiers in Microbiology
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- (2016) Beverly E. Flood et al. Frontiers in Microbiology
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- (2016) PM Riekenberg et al. MARINE ECOLOGY PROGRESS SERIES
- Improved ultrastructure of marine invertebrates using non-toxic buffers
- (2016) Jacqueline Montanaro et al. PeerJ
- Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation
- (2016) Jillian M. Petersen et al. Nature Microbiology
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- 2016 update of the PRIDE database and its related tools
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- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys
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- (2014) Magali Zbinden et al. MARINE BIOLOGY
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- (2014) Katrin Zwirglmaier et al. MicrobiologyOpen
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- (2013) Y. Liao et al. BIOINFORMATICS
- Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria
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- (2013) M. Kleiner et al. mBio
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- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
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- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- Chemoautotrophy at Deep-Sea Vents: Past, Present, and Future
- (2012) Stefan Sievert et al. OCEANOGRAPHY
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- (2012) R. A. Beinart et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
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- (2012) Marc Strous et al. Frontiers in Microbiology
- Ecological Aspects of the Distribution of Different Autotrophic CO2Fixation Pathways
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- ProtTest 3: fast selection of best-fit models of protein evolution
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- (2011) J. J. Gilbreath et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Hydrogen is an energy source for hydrothermal vent symbioses
- (2011) Jillian M. Petersen et al. NATURE
- Ecology drives a global network of gene exchange connecting the human microbiome
- (2011) Chris S. Smillie et al. NATURE
- Sulfur Metabolisms in Epsilon- and Gamma-Proteobacteria in Deep-Sea Hydrothermal Fields
- (2011) Masahiro Yamamoto et al. Frontiers in Microbiology
- Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean
- (2010) Michael Hügler et al. Annual Review of Marine Science
- Design and analysis of synthetic carbon fixation pathways
- (2010) A. Bar-Even et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
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- (2009) JA Raven AQUATIC MICROBIAL ECOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Macrobenthos community structure and trophic relationships within active and inactive Pacific hydrothermal sediments
- (2009) Lisa A. Levin et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: diversity, function and evolution
- (2008) Sébastien Duperron et al. COMPTES RENDUS BIOLOGIES
- Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics
- (2008) Julie C. Robidart et al. ENVIRONMENTAL MICROBIOLOGY
- Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance
- (2008) Satoshi Nakagawa et al. FEMS MICROBIOLOGY ECOLOGY
- Stable Isotope Variation Among the Mussel Bathymodiolus childressi and Associated Heterotrophic Fauna at Four Cold-Seep Communities in the Gulf of Mexico
- (2008) S. E. MacAvoy et al. JOURNAL OF SHELLFISH RESEARCH
- Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
- (2008) Nicole Dubilier et al. NATURE REVIEWS MICROBIOLOGY
- The evolution of modularity in bacterial metabolic networks
- (2008) A. Kreimer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Microbial Engines That Drive Earth's Biogeochemical Cycles
- (2008) P. G. Falkowski et al. SCIENCE
- Genome assembly forensics: finding the elusive mis-assembly
- (2008) Adam M Phillippy et al. GENOME BIOLOGY
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