Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions

Oxidation of Molecular Hydrogen by a Chemolithoautotrophic Beggiatoa Strain

(2016) Anne-Christin Kreutzmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity

(2016) Beverly E. Flood et al.   Frontiers in Microbiology

Metatranscriptomic Analysis of Diminutive Thiomargarita-Like Bacteria (“Candidatus Thiopilula” spp.) from Abyssal Cold Seeps of the Barbados Accretionary Prism

(2015) Daniel S. Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic insights into polyphosphate metabolism in marine sediments

(2015) Daniel S Jones et al.   ISME Journal

Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture

(2014) Beate Kraft et al.   ENVIRONMENTAL MICROBIOLOGY

Horizontal gene transfer and the rock record: comparative genomics of phylogenetically distant bacteria that induce wrinkle structure formation in modern sediments

(2014) B. E. Flood et al.   Geobiology

Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence

(2014) Hisaya Kojima et al.   ISME Journal

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

(2014) A. K. Hawley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic and morphologic complexity of giant sulphur bacteria

(2013) Verena Salman et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Mobile Elements in a Single-Filament Orange Guaymas Basin Beggiatoa (“Candidatus Maribeggiatoa”) sp. Draft Genome: Evidence for Genetic Exchange with Cyanobacteria

(2013) Barbara J. MacGregor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Close association of active nitrifiers withBeggiatoamats covering deep-sea hydrothermal sediments

(2013) Matthias Winkel et al.   ENVIRONMENTAL MICROBIOLOGY

Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament

(2013) Barbara J. MacGregor et al.   Marine Genomics

Nitrogen losses in anoxic marine sediments driven by Thioploca–anammox bacterial consortia

(2013) M. G. Prokopenko et al.   NATURE

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

(2013) J. H. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why Orange Guaymas Basin Beggiatoa spp. Are Orange: Single-Filament-Genome-Enabled Identification of an Abundant Octaheme Cytochrome with Hydroxylamine Oxidase, Hydrazine Oxidase, and Nitrite Reductase Activities

(2012) Barbara J. MacGregor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation

(2012) Wolfgang Buckel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer

(2012) Manuel Kleiner et al.   CURRENT OPINION IN MICROBIOLOGY

Photorespiration has a dual origin and manifold links to central metabolism

(2012) Hermann Bauwe et al.   CURRENT OPINION IN PLANT BIOLOGY

Vacuolar respiration of nitrate coupled to energy conservation in filamentousBeggiatoaceae

(2012) Martin Beutler et al.   ENVIRONMENTAL MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria

(2012) V. Salman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

(2012) M. Kleiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sulfur Respiration in a Marine Chemolithoautotrophic Beggiatoa Strain

(2012) Anne Schwedt et al.   Frontiers in Microbiology

Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea)

(2011) S. GRÜNKE et al.   Geobiology

Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria

(2011) Jake V Bailey et al.   ISME Journal

Hydrogen is an energy source for hydrothermal vent symbioses

(2011) Jillian M. Petersen et al.   NATURE

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria

(2011) Verena Salman et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes

(2010) Eva Biegel et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Sulfide induces phosphate release from polyphosphate in cultures of a marine Beggiatoa strain

(2010) Jörg Brock et al.   ISME Journal

Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum

(2010) C. Jogler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequence ofDesulfobacterium autotrophicumHRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide

(2009) Axel W. Strittmatter et al.   ENVIRONMENTAL MICROBIOLOGY

JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes

(2008) Michael Richter et al.   BMC BIOINFORMATICS

Evolution of an octahaem cytochromecprotein family that is key to aerobic and anaerobic ammonia oxidation by bacteria

(2008) Martin G. Klotz et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of the pyrophosphate-dependent 6-phosphofructokinase fromMethylococcus capsulatusBath

(2008) Alexander S. Reshetnikov et al.   FEMS MICROBIOLOGY LETTERS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle

(2008) Murray Ronald Badger et al.   JOURNAL OF EXPERIMENTAL BOTANY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants

(2008) M. Eisenhut et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA