标题
Exploring the extracellular matrix in health and disease using proteomics
作者
关键词
-
出版物
Essays in Biochemistry
Volume 63, Issue 3, Pages 417-432
出版商
Portland Press Ltd.
发表日期
2019-08-28
DOI
10.1042/ebc20190001
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Understanding the role of chondrocytes in osteoarthritis: utilizing proteomics
- (2019) Varvara Trachana et al. Expert Review of Proteomics
- Identification and Characterization of Canine Ligament Progenitor Cells and Their Extracellular Matrix Niche
- (2019) Katie J Lee et al. JOURNAL OF PROTEOME RESEARCH
- Mass spectrometry–based molecular mapping of native FXIIIa cross-links in insoluble fibrin clots
- (2019) Lauren R. Schmitt et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A disintegrin-like and metalloproteinase domain with thrombospondin type 1 motif 9 (ADAMTS9) regulates fibronectin fibrillogenesis and turnover
- (2019) Lauren W. Wang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Citrullination of fibronectin alters integrin clustering and focal adhesion stability promoting stromal cell invasion
- (2019) Victoria L. Stefanelli et al. MATRIX BIOLOGY
- Nanobody-based CAR T cells that target the tumor microenvironment inhibit the growth of solid tumors in immunocompetent mice
- (2019) Yushu Joy Xie et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Noninvasive imaging of tumor progression, metastasis, and fibrosis using a nanobody targeting the extracellular matrix
- (2019) Noor Jailkhani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Role of prolyl hydroxylation in the molecular interactions of collagens
- (2019) Pekka Rappu et al. Essays in Biochemistry
- Phosphorylated fibronectin enhances cell attachment and upregulates mechanical cell functions
- (2019) Garif Yalak et al. PLoS One
- Anchoring of intratumorally administered cytokines to collagen safely potentiates systemic cancer immunotherapy
- (2019) Noor Momin et al. Science Translational Medicine
- Glaucomatous cell derived matrices differentially modulate non-glaucomatous trabecular meshwork cellular behavior
- (2018) Vijay Krishna Raghunathan et al. Acta Biomaterialia
- Role of ADAMTS-5 in Aortic Dilatation and Extracellular Matrix RemodelingHighlights
- (2018) Marika Fava et al. ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY
- Proteomic analysis of the cardiac extracellular matrix: clinical research applications
- (2018) Merry L. Lindsey et al. Expert Review of Proteomics
- Charting the unexplored extracellular matrix in cancer
- (2018) Elysse C. Filipe et al. INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY
- SWATH mass spectrometry as a tool for quantitative profiling of the matrisome
- (2018) Lukas Krasny et al. Journal of Proteomics
- Quantitative proteomic characterization of the lung extracellular matrix in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis
- (2018) Emma Åhrman et al. Journal of Proteomics
- Extracellular matrix in lung development, homeostasis and disease
- (2018) Yong Zhou et al. MATRIX BIOLOGY
- Extracellular matrix: The driving force of mammalian diseases
- (2018) Renato V. Iozzo et al. MATRIX BIOLOGY
- Antibodies and methods for immunohistochemistry of extracellular matrix proteins
- (2018) Steffen Rickelt et al. MATRIX BIOLOGY
- A Selective Extracellular Matrix Proteomics Approach Identifies Fibronectin Proteolysis by A Disintegrin-like and Metalloprotease Domain with Thrombospondin Type 1 Motifs (ADAMTS16) and Its Impact on Spheroid Morphogenesis
- (2018) Rahel Schnellmann et al. MOLECULAR & CELLULAR PROTEOMICS
- The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis
- (2018) Marjaana Ojalill et al. PROSTATE
- The cancer matrisome: From comprehensive characterization to biomarker discovery
- (2018) Alexandra M. Socovich et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Human Osteoblast-Derived Extracellular Matrix with High Homology to Bone Proteome Is Osteopromotive
- (2018) Marta Baroncelli et al. TISSUE ENGINEERING PART A
- Quantifying extracellular matrix turnover in human lung scaffold cultures
- (2018) Oskar Rosmark et al. Scientific Reports
- Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
- (2018) Ziad Al Bkhetan et al. Scientific Reports
- Three-Dimensional in Vitro Cell Culture Models in Drug Discovery and Drug Repositioning
- (2018) Sigrid A. Langhans Frontiers in Pharmacology
- Extracellular matrix-based materials for regenerative medicine
- (2018) George S. Hussey et al. Nature Reviews Materials
- Identification of Novel Natural Substrates of Fibroblast Activation Protein-alpha by Differential Degradomics and Proteomics
- (2018) Hui Emma Zhang et al. MOLECULAR & CELLULAR PROTEOMICS
- Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
- (2018) Christina Ludwig et al. Molecular Systems Biology
- Targeted matrisome analysis identifies thrombospondin-2 and tenascin-C in aligned collagen stroma from invasive breast carcinoma
- (2018) Lucas A. Tomko et al. Scientific Reports
- Label-Free Quantification Proteomics for the Identification of Mesenchymal Stromal Cell Matrisome Inside 3D Poly(Ethylene Glycol) Hydrogels
- (2018) Yannick R. Devaud et al. Advanced Healthcare Materials
- Characterization of a Cell-Assembled extracellular Matrix and the effect of the devitalization process
- (2018) Laure Magnan et al. Acta Biomaterialia
- Dynamic matrisome: ECM remodeling factors licensing cancer progression and metastasis
- (2018) Arseniy E. Yuzhalin et al. BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
- Targeted proteomics of hip articular cartilage in OA and fracture patients
- (2018) Shahrzad Hosseininia et al. JOURNAL OF ORTHOPAEDIC RESEARCH
- MatrixDB: integration of new data with a focus on glycosaminoglycan interactions
- (2018) Olivier Clerc et al. NUCLEIC ACIDS RESEARCH
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- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- Extracellular matrix derived from chondrocytes promotes rapid expansion of human primary chondrocytes in vitro with reduced dedifferentiation
- (2018) Yong Mao et al. Acta Biomaterialia
- The instructive extracellular matrix of the lung: basic composition and alterations in chronic lung disease
- (2017) Gerald Burgstaller et al. EUROPEAN RESPIRATORY JOURNAL
- Extracellular matrix proteomics identifies molecular signature of symptomatic carotid plaques
- (2017) Sarah R. Langley et al. JOURNAL OF CLINICAL INVESTIGATION
- Hydroxylamine Chemical Digestion for Insoluble Extracellular Matrix Characterization
- (2017) Alexander S. Barrett et al. JOURNAL OF PROTEOME RESEARCH
- Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics
- (2017) Alexandra Naba et al. JOURNAL OF PROTEOME RESEARCH
- Characterization of glomerular extracellular matrix by proteomic analysis of laser-captured microdissected glomeruli
- (2017) Liliane Hobeika et al. KIDNEY INTERNATIONAL
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- (2017) S V Glavey et al. LEUKEMIA
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- (2017) Alexandra K. Pastino et al. MATRIX BIOLOGY
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- (2017) Yang Wang et al. MATRIX BIOLOGY
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- (2017) Michael J. Randles et al. MATRIX BIOLOGY
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- (2017) Alejandro E Mayorca-Guiliani et al. NATURE MEDICINE
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- (2017) Willi Halfter et al. PLoS One
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- (2017) Vasilena Gocheva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2017) Oliver M.T. Pearce et al. Cancer Discovery
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- (2017) Alexandra Naba et al. Scientific Reports
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- (2017) Alessandra Costa et al. Cold Spring Harbor Perspectives in Medicine
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- (2017) Gonca Suna et al. CIRCULATION
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- (2017) Joana Caldeira et al. Scientific Reports
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- (2016) Sarah M. Lyon et al. ANALYTICAL BIOCHEMISTRY
- Comparative proteomic assessment of matrisome enrichment methodologies
- (2016) L. Krasny et al. BIOCHEMICAL JOURNAL
- Proteases decode the extracellular matrix cryptome
- (2016) Sylvie Ricard-Blum et al. BIOCHIMIE
- Positional proteomics in the era of the human proteome project on the doorstep of precision medicine
- (2016) Ulrich Eckhard et al. BIOCHIMIE
- Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins
- (2016) Javier Barallobre-Barreiro et al. CARDIOVASCULAR RESEARCH
- Systems biology—opportunities and challenges: the application of proteomics to study the cardiovascular extracellular matrix
- (2016) Javier Barallobre-Barreiro et al. CARDIOVASCULAR RESEARCH
- Molecular insights into prolyl and lysyl hydroxylation of fibrillar collagens in health and disease
- (2016) Rutger A. F. Gjaltema et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- The hepatic “matrisome” responds dynamically to injury: Characterization of transitional changes to the extracellular matrix in mice
- (2016) Veronica L. Massey et al. HEPATOLOGY
- Quantitative extracellular matrix proteomics to study mammary and liver tissue microenvironments
- (2016) Erica T. Goddard et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Elucidating the Molecular Composition of Cartilage by Proteomics
- (2016) Ming-Feng Hsueh et al. JOURNAL OF PROTEOME RESEARCH
- Proteomic Analysis of Human Tendon and Ligament: Solubilization and Analysis of Insoluble Extracellular Matrix in Connective Tissues
- (2016) Nori Sato et al. JOURNAL OF PROTEOME RESEARCH
- The extracellular matrix: Tools and insights for the “omics” era
- (2016) Alexandra Naba et al. MATRIX BIOLOGY
- Mass-spectrometric exploration of proteome structure and function
- (2016) Ruedi Aebersold et al. NATURE
- Force Matters: Biomechanical Regulation of Cell Invasion and Migration in Disease
- (2016) FuiBoon Kai et al. TRENDS IN CELL BIOLOGY
- TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors
- (2016) Anna Prudova et al. Cell Reports
- Extracellular Matrix Molecular Remodeling in Human Liver Fibrosis Evolution
- (2016) Andrea Baiocchini et al. PLoS One
- The alterations in the extracellular matrix composition guide the repair of damaged liver tissue
- (2016) Mariliis Klaas et al. Scientific Reports
- Epithelial polarity – Generating and integrating signals from the ECM with integrins
- (2015) Aki Manninen EXPERIMENTAL CELL RESEARCH
- Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High-Resolution Mass Spectrometry
- (2015) Trayambak Basak et al. JOURNAL OF PROTEOME RESEARCH
- Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions
- (2015) Pascal Schlage et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantification of Extracellular Matrix Proteins from a Rat Lung Scaffold to Provide a Molecular Readout for Tissue Engineering
- (2015) Ryan C. Hill et al. MOLECULAR & CELLULAR PROTEOMICS
- Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair
- (2015) H. B. Schiller et al. Molecular Systems Biology
- Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
- (2015) Fan Liu et al. NATURE METHODS
- Quantification of decellularized human myocardial matrix: A comparison of six patients
- (2015) Todd D. Johnson et al. Proteomics Clinical Applications
- Extracellular matrix: A dynamic microenvironment for stem cell niche
- (2014) Francesca Gattazzo et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver
- (2014) Alexandra Naba et al. BMC CANCER
- Dynamic Changes in Myocardial Matrix and Relevance to Disease
- (2014) Ai-Hsien Li et al. CIRCULATION RESEARCH
- Lysine post-translational modifications of collagen
- (2014) Mitsuo Yamauchi et al. Essays in Biochemistry
- Matricryptins and matrikines: biologically active fragments of the extracellular matrix
- (2014) Sylvie Ricard-Blum et al. EXPERIMENTAL DERMATOLOGY
- Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics
- (2014) Navin Rauniyar et al. JOURNAL OF PROTEOME RESEARCH
- Glomerular Cell Cross-Talk Influences Composition and Assembly of Extracellular Matrix
- (2014) A. Byron et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Global Analysis Reveals the Complexity of the Human Glomerular Extracellular Matrix
- (2014) R. Lennon et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Quantitative proteomics at different depths in human articular cartilage reveals unique patterns of protein distribution
- (2014) Catharina Müller et al. MATRIX BIOLOGY
- Proteomic Analysis of Altered Extracellular Matrix Turnover in Bleomycin-induced Pulmonary Fibrosis
- (2014) Martin L. Decaris et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach
- (2014) Steven A. Carr et al. MOLECULAR & CELLULAR PROTEOMICS
- Is there new hope for therapeutic matrix metalloproteinase inhibition?
- (2014) Roosmarijn E. Vandenbroucke et al. NATURE REVIEWS DRUG DISCOVERY
- Remodelling the extracellular matrix in development and disease
- (2014) Caroline Bonnans et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters
- (2014) Alexandra Naba et al. eLife
- Targeted Quantitation of Proteins by Mass Spectrometry
- (2013) Daniel C. Liebler et al. BIOCHEMISTRY
- Rejuvenation of chondrogenic potential in a young stem cell microenvironment
- (2013) Jingting Li et al. BIOMATERIALS
- Protein Analysis by Shotgun/Bottom-up Proteomics
- (2013) Yaoyang Zhang et al. CHEMICAL REVIEWS
- Defining the extracellular matrix using proteomics
- (2013) Adam Byron et al. INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY
- Cleaning up the masses: Exclusion lists to reduce contamination with HPLC-MS/MS
- (2013) Kelly Hodge et al. Journal of Proteomics
- Texas 3-Step decellularization protocol: Looking at the cardiac extracellular matrix
- (2013) Lisandra E. de Castro Brás et al. Journal of Proteomics
- Proteolytic Post-translational Modification of Proteins: Proteomic Tools and Methodology
- (2013) Lindsay D. Rogers et al. MOLECULAR & CELLULAR PROTEOMICS
- Role of the extracellular matrix in regulating stem cell fate
- (2013) Fiona M. Watt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Using proteomics to uncover extracellular matrix interactions during cardiac remodeling
- (2013) Nicolle L. Patterson et al. Proteomics Clinical Applications
- Proteomics Analysis of Cardiac Extracellular Matrix Remodeling in a Porcine Model of Ischemia/Reperfusion Injury
- (2012) Javier Barallobre-Barreiro et al. CIRCULATION
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- (2012) Patrik Önnerfjord et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Heart extracellular matrix supports cardiomyocyte differentiation of mouse embryonic stem cells
- (2012) Sayaka Higuchi et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING
- Proteomic analysis of extracellular matrix from the hepatic stellate cell line LX-2 identifies CYR61 and Wnt-5a as novel constituents of fibrotic liver
- (2012) S. Tamir Rashid et al. JOURNAL OF PROTEOME RESEARCH
- Towards definition of an ECM parts list: An advance on GO categories
- (2012) Alexandra Naba et al. MATRIX BIOLOGY
- Applications of proteomics in cartilage biology and osteoarthritis research
- (2011) Adam Williams Frontiers in Bioscience-Landmark
- Extracellular Matrix Composition and Remodeling in Human Abdominal Aortic Aneurysms: A Proteomics Approach
- (2011) Athanasios Didangelos et al. MOLECULAR & CELLULAR PROTEOMICS
- The Matrisome:In SilicoDefinition andIn VivoCharacterization by Proteomics of Normal and Tumor Extracellular Matrices
- (2011) Alexandra Naba et al. MOLECULAR & CELLULAR PROTEOMICS
- ECM roles in the function of metabolic tissues
- (2011) Guorui Huang et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Overview of the Matrisome--An Inventory of Extracellular Matrix Constituents and Functions
- (2011) R. O. Hynes et al. Cold Spring Harbor Perspectives in Biology
- Extracellular Matrix Degradation and Remodeling in Development and Disease
- (2011) P. Lu et al. Cold Spring Harbor Perspectives in Biology
- The extracellular matrix: an underexplored but important proteome
- (2010) Richard Wilson Expert Review of Proteomics
- The extracellular matrix in development and morphogenesis: A dynamic view
- (2009) Tania Rozario et al. DEVELOPMENTAL BIOLOGY
- Proteomics and liver fibrosis: identifying markers of fibrogenesis
- (2009) Valeria R Mas et al. Expert Review of Proteomics
- Genetic diseases of connective tissues: cellular and extracellular effects of ECM mutations
- (2009) John F. Bateman et al. NATURE REVIEWS GENETICS
- Extracellular Matrix Molecules: Potential Targets in Pharmacotherapy
- (2009) H. Jarvelainen et al. PHARMACOLOGICAL REVIEWS
- The Extracellular Matrix: Not Just Pretty Fibrils
- (2009) R. O. Hynes SCIENCE
- Drug discovery in the extracellular matrix
- (2008) Julie Huxley-Jones et al. DRUG DISCOVERY TODAY
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