A single‐cell transcriptome atlas of the adult human retina

Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution

(2019) Takahiro Masuda et al.   NATURE

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

(2019) Yi-Rong Peng et al.   CELL

Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing

(2019) A.P. Voigt et al.   EXPERIMENTAL EYE RESEARCH

A journey into the retina: Müller glia commanding survival and death

(2018) Paula V. Subirada et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Isolation of Human Photoreceptor Precursors via a Cell Surface Marker Panel from Stem Cell-Derived Retinal Organoids and Fetal Retinae

(2018) Jörn Lakowski et al.   STEM CELLS

Thyroid hormone signaling specifies cone subtypes in human retinal organoids

(2018) Kiara C. Eldred et al.   SCIENCE

Simultaneous epitope and transcriptome measurement in single cells

(2017) Marlon Stoeckius et al.   NATURE METHODS

Drug discovery using induced pluripotent stem cell models of neurodegenerative and ocular diseases

(2017) Sandy S.C. Hung et al.   PHARMACOLOGY & THERAPEUTICS

A Novel Approach to Single Cell RNA-Sequence Analysis Facilitates In Silico Gene Reporting of Human Pluripotent Stem Cell-Derived Retinal Cell Types

(2017) M. Joseph Phillips et al.   STEM CELLS

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells

(2017) Emily Welby et al.   Stem Cell Reports

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

Assessing similarity to primary tissue and cortical layer identity in induced pluripotent stem cell-derived cortical neurons through single-cell transcriptomics

(2016) Adam E. Handel et al.   HUMAN MOLECULAR GENETICS

Precise long non-coding RNA modulation in visual maintenance and impairment

(2016) Peixing Wan et al.   JOURNAL OF MEDICAL GENETICS

An atlas of gene expression and gene co-regulation in the human retina

(2016) Michele Pinelli et al.   NUCLEIC ACIDS RESEARCH

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Long Non-Coding RNA MALAT1 Mediates Transforming Growth Factor Beta1-Induced Epithelial-Mesenchymal Transition of Retinal Pigment Epithelial Cells

(2016) Shuai Yang et al.   PLoS One

Glia–neuron interactions in the mammalian retina

(2016) Elena Vecino et al.   PROGRESS IN RETINAL AND EYE RESEARCH

Mechanisms of Photoreceptor Patterning in Vertebrates and Invertebrates

(2016) Kayla Viets et al.   TRENDS IN GENETICS

Enriched retinal ganglion cells derived from human embryonic stem cells

(2016) Katherine P. Gill et al.   Scientific Reports

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Onecut1 and Onecut2 transcription factors operate downstream of Pax6 to regulate horizontal cell development

(2015) Lucie Klimova et al.   DEVELOPMENTAL BIOLOGY

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

(2015) Monika S. Kowalczyk et al.   GENOME RESEARCH

Phenotypic and functional analyses show stem cell-derived hepatocyte-like cells better mimic fetal rather than adult hepatocytes

(2015) Melissa Baxter et al.   JOURNAL OF HEPATOLOGY

Astrocytes and Müller Cell Alterations During Retinal Degeneration in a Transgenic Rat Model of Retinitis Pigmentosa

(2015) Laura Fernández-Sánchez et al.   Frontiers in Cellular Neuroscience

Differentiation of human ESCs to retinal ganglion cells using a CRISPR engineered reporter cell line

(2015) Valentin M. Sluch et al.   Scientific Reports

Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq

(2014) S. Scott Whitmore et al.   EXPERIMENTAL EYE RESEARCH

Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification

(2014) Jennifer M. Enright et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes

(2013) Michael H Farkas et al.   BMC GENOMICS

Thymosin beta 4 gene silencing decreases stemness and invasiveness in glioblastoma

(2013) Hans-Georg Wirsching et al.   BRAIN

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Molecular signature of primary retinal pigment epithelium and stem-cell-derived RPE cells

(2010) Jo-Ling Liao et al.   HUMAN MOLECULAR GENETICS

Transcriptome analysis and molecular signature of human retinal pigment epithelium

(2010) N.V. Strunnikova et al.   HUMAN MOLECULAR GENETICS

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Tbx2b is required for ultraviolet photoreceptor cell specification during zebrafish retinal development

(2009) Karen Alvarez-Delfin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Retinal Ganglion Cells Downregulate Gene Expression and Lose Their Axons within the Optic Nerve Head in a Mouse Glaucoma Model

(2008) I. Soto et al.   JOURNAL OF NEUROSCIENCE

The spectrum of retinal dystrophies caused by mutations in the peripherin/RDS gene

(2008) Camiel J.F. Boon et al.   PROGRESS IN RETINAL AND EYE RESEARCH