Integrated analysis of long non-coding RNA and mRNA expression in different colored skin of koi carp

Identification and characterization of skin color microRNAs in Koi carp (Cyprinus carpio L.) by Illumina sequencing

(2018) Mingkun Luo et al.   BMC GENOMICS

Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

(2016) Hangxing Ren et al.   BMC GENOMICS

Ion Torrent next-generation sequencing reveals the complete mitochondrial genome of koi carp (Cyprinus carpio, Cyprinidae)

(2016) Xuezhu Li et al.   Mitochondrial DNA Part B-Resources

Involvement of the mitfa gene in the development of pigment cell in Japanese ornamental (Koi) carp (Cyprinus carpio L.)

(2015) J.H. Liu et al.   GENETICS AND MOLECULAR RESEARCH

Gene Expression Variations of Red—White Skin Coloration in Common Carp (Cyprinus carpio)

(2015) Xiao-Min Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

B-Cell Receptor Signaling in Diffuse Large B-Cell lymphoma

(2015) Ryan M. Young et al.   SEMINARS IN HEMATOLOGY

Hydroalcoholic extract of Rhodiola rosea L. (Crassulaceae) and its hydrolysate inhibit melanogenesis in B16F0 cells by regulating the CREB/MITF/tyrosinase pathway

(2014) Hsiu-Mei Chiang et al.   FOOD AND CHEMICAL TOXICOLOGY

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

(2014) Peng Xu et al.   NATURE GENETICS

The rise of regulatory RNA

(2014) Kevin V. Morris et al.   NATURE REVIEWS GENETICS

An update on LNCipedia: a database for annotated human lncRNA sequences

(2014) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

Mechanisms and consequences of constitutive NF-κB activation in B-cell lymphoid malignancies

(2014) D Nagel et al.   ONCOGENE

Dynamic Expression of Long Non-Coding RNAs (lncRNAs) in Adult Zebrafish

(2014) Kriti Kaushik et al.   PLoS One

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Endothelin-1 enhances the melanogenesis via MITF-GPNMB pathway

(2013) Ping Zhang et al.   BMB Reports

Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing

(2013) Rosemarie Weikard et al.   BMC GENOMICS

Long non-coding RNAs: A new frontier in the study of human diseases

(2013) Xuefei Shi et al.   CANCER LETTERS

LncRNA profiling reveals new mechanism for VDR protection against skin cancer formation

(2013) Yan J. Jiang et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study

(2012) Lei Sun et al.   BMC BIOINFORMATICS

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Colours of domestication

(2011) Michael Cieslak et al.   BIOLOGICAL REVIEWS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

FGF/MAPK/Ets signaling renders pigment cell precursors competent to respond to Wnt signal by directly controlling Ci-Tcf transcription

(2011) Paola Squarzoni et al.   DEVELOPMENT

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

lincRNAs act in the circuitry controlling pluripotency and differentiation

(2011) Mitchell Guttman et al.   NATURE

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

(2011) Tiffany Hung et al.   NATURE GENETICS

The Developmental Role of Agouti in Color Pattern Evolution

(2011) M. Manceau et al.   SCIENCE

Assembling Neural Crest Regulatory Circuits into a Gene Regulatory Network

(2010) Paola Betancur et al.   Annual Review of Cell and Developmental Biology

mitfa is required at multiple stages of melanocyte differentiation but not to establish the melanocyte stem cell

(2010) Stephen L. Johnson et al.   DEVELOPMENTAL BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Different strategies for color change

(2009) S. Aspengren et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

Genetics of salmonid skin pigmentation: clues and prospects for improving the external appearance of farmed salmonids

(2009) Nelson Colihueque   REVIEWS IN FISH BIOLOGY AND FISHERIES

Evolution of Coloration Patterns

(2008) Meredith E. Protas et al.   Annual Review of Cell and Developmental Biology