Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
出版年份 2019 全文链接
标题
Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
作者
关键词
Cattle genome, Functional annotation, Chromatin states, Butyrate, Rumen development
出版物
BMC BIOLOGY
Volume 17, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-08-16
DOI
10.1186/s12915-019-0687-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The effect of sodium butyrate and cisplatin on expression of EMT markers
- (2019) Alena Mrkvicova et al. PLoS One
- Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits
- (2019) Lingzhao Fang et al. Epigenetics
- Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits
- (2018) Aline S. M. Cesar et al. BMC GENOMICS
- Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals
- (2018) Aniek C. Bouwman et al. NATURE GENETICS
- Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds
- (2018) Marina Naval-Sanchez et al. Nature Communications
- MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle
- (2018) Lingzhao Fang et al. Scientific Reports
- A comprehensive manually-curated compendium of bovine transcription factors
- (2018) Marcela M. de Souza et al. Scientific Reports
- Infusion of sodium butyrate promotes rumen papillae growth and enhances expression of genes related to rumen epithelial VFA uptake and metabolism in neonatal twin lambs
- (2018) Lixiang Liu et al. JOURNAL OF ANIMAL SCIENCE
- Harnessing genomic information for livestock improvement
- (2018) Michel Georges et al. NATURE REVIEWS GENETICS
- Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap
- (2018) Elisabetta Giuffra et al. Annual Review of Animal Biosciences
- Genetic effects on gene expression across human tissues
- (2017) François Aguet et al. NATURE
- Dynamic changes in chromatin states during specification and differentiation of adult intestinal stem cells
- (2017) Juri Kazakevych et al. NUCLEIC ACIDS RESEARCH
- Multiple Trait Covariance Association Test Identifies Gene Ontology Categories Associated with Chill Coma Recovery Time in Drosophila melanogaster
- (2017) Izel Fourie Sørensen et al. Scientific Reports
- A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
- (2017) Emily L. Clark et al. PLoS Genetics
- Deletion of the MAD2L1 spindle assembly checkpoint gene is tolerated in mouse models of acute T-cell lymphoma and hepatocellular carcinoma
- (2017) Floris Foijer et al. eLife
- Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation
- (2017) Bo Yu et al. Stem Cell Reports
- The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types
- (2017) Hideya Kawaji et al. Scientific Data
- Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs
- (2016) Pernille Sarup et al. BMC GENETICS
- Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits
- (2016) I. M. MacLeod et al. BMC GENOMICS
- Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes
- (2016) Palle Duun Rohde et al. GENETICS
- Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes
- (2016) Palle Duun Rohde et al. GENETICS
- The role dietary of bioactive compounds on the regulation of histone acetylases and deacetylases: A review
- (2015) F. Vahid et al. GENE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Partitioning heritability by functional annotation using genome-wide association summary statistics
- (2015) Hilary K Finucane et al. NATURE GENETICS
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
- (2015) Leif Andersson et al. GENOME BIOLOGY
- MultiBLUP: improved SNP-based prediction for complex traits
- (2014) Doug Speed et al. GENOME RESEARCH
- Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle
- (2014) Lingyang Xu et al. MOLECULAR BIOLOGY AND EVOLUTION
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
- (2014) James R Wagner et al. GENOME BIOLOGY
- The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis
- (2013) P. M. Smith et al. SCIENCE
- Gut–brain axis: how the microbiome influences anxiety and depression
- (2013) Jane A. Foster et al. TRENDS IN NEUROSCIENCES
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cells
- (2012) Joo Heon Shin et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- DNA Methylation and Its Basic Function
- (2012) Lisa D Moore et al. NEUROPSYCHOPHARMACOLOGY
- Integrative annotation of chromatin elements from ENCODE data
- (2012) Michael M. Hoffman et al. NUCLEIC ACIDS RESEARCH
- Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era
- (2012) Zhi-Liang Hu et al. NUCLEIC ACIDS RESEARCH
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Transcriptome Characterization by RNA-seq Unravels the Mechanisms of Butyrate-Induced Epigenomic Regulation in Bovine Cells
- (2012) Sitao Wu et al. PLoS One
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- CpG island chromatin
- (2011) Neil P. Blackledge et al. Epigenetics
- Effect of method of delivery of sodium butyrate on rumen development in newborn calves
- (2011) P. Górka et al. JOURNAL OF DAIRY SCIENCE
- New views of Arc, a master regulator of synaptic plasticity
- (2011) Jason D Shepherd et al. NATURE NEUROSCIENCE
- Enhancer function: new insights into the regulation of tissue-specific gene expression
- (2011) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures
- (2010) Hong-Qiang Wang et al. BIOINFORMATICS
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Histone deacetylase inhibition alters histone methylation associated with heat shock protein 70 promoter modifications in astrocytes and neurons
- (2010) Zoya Marinova et al. NEUROPHARMACOLOGY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Histone deacetylase inhibition and the regulation of cell growth with particular reference to liver pathobiology
- (2009) Fraczek Joanna et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started