MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle

Genomic Analysis of Genotype-by-Social Environment Interaction forDrosophila melanogasterAggressive Behavior

(2017) Palle Duun Rohde et al.   GENETICS

Co-Expression Network and Pathway Analyses Reveal Important Modules of miRNAs Regulating Milk Yield and Component Traits

(2017) Duy Do et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Expression profiles of miRNAs from bovine mammary glands in response to Streptococcus agalactiae-induced mastitis

(2017) Junhua Pu et al.   JOURNAL OF DAIRY RESEARCH

Inflammation-related microRNA expression level in the bovine milk is affected by mastitis

(2017) Yu-Chang Lai et al.   PLoS One

Multiple Trait Covariance Association Test Identifies Gene Ontology Categories Associated with Chill Coma Recovery Time in Drosophila melanogaster

(2017) Izel Fourie Sørensen et al.   Scientific Reports

SNPs in microRNA target sites and their potential role in human disease

(2017) Adrianna Moszyńska et al.   Open Biology

Genomic Analysis of Genotype-by-Social Environment Interaction forDrosophila melanogasterAggressive Behavior

(2017) Palle Duun Rohde et al.   GENETICS

Charting the genotype-phenotype map: lessons from the Drosophila melanogaster Genetic Reference Panel

(2017) Trudy F.C. Mackay et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle

(2017) Lingzhao Fang et al.   Scientific Reports

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

(2016) T. Iso-Touru et al.   BMC GENETICS

Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs

(2016) Pernille Sarup et al.   BMC GENETICS

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits

(2016) I. M. MacLeod et al.   BMC GENOMICS

Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes

(2016) Palle Duun Rohde et al.   GENETICS

Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

(2016) Stefan M. Edwards et al.   GENETICS

Genome-wide association studies of growth traits in three dairy cattle breeds using whole-genome sequence data1

(2016) X. Mao et al.   JOURNAL OF ANIMAL SCIENCE

Association analysis for feet and legs disorders with whole-genome sequence variants in 3 dairy cattle breeds

(2016) Xiaoping Wu et al.   JOURNAL OF DAIRY SCIENCE

Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes

(2016) Palle Duun Rohde et al.   GENETICS

Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

(2016) Stefan M. Edwards et al.   GENETICS

Characterization and Profiling of Liver microRNAs by RNA-sequencing in Cattle Divergently Selected for Residual Feed Intake

(2015) Wijdan Al-Husseini et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Transcriptome MicroRNA Profiling of Bovine Mammary Glands Infected with Staphylococcus aureus

(2015) Rui Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Partitioning heritability by functional annotation using genome-wide association summary statistics

(2015) Hilary K Finucane et al.   NATURE GENETICS

Bioinformatic tools for microRNA dissection

(2015) Most Mauluda Akhtar et al.   NUCLEIC ACIDS RESEARCH

Differential expression of microRNAs in porcine parvovirus infected porcine cell line

(2015) Xinqiong Li et al.   Virology Journal

minimac2: faster genotype imputation

(2014) Christian Fuchsberger et al.   BIOINFORMATICS

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle

(2014) Rasmus Brøndum et al.   BMC GENOMICS

Non-Coding RNAs and Lipid Metabolism

(2014) Elisabeth Smolle et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Discovering the complexity of the metazoan transcriptome

(2014) Matthew J Hangauer et al.   GENOME BIOLOGY

Mechanisms of miRNA-Mediated Gene Regulation from Common Downregulation to mRNA-Specific Upregulation

(2014) Ayla Valinezhad Orang et al.   International Journal of Genomics

MicroRNAs and Atherosclerosis

(2013) Julio Madrigal-Matute et al.   Current Atherosclerosis Reports

MicroRNAs in cardiovascular disease: from pathogenesis to prevention and treatment

(2013) Daniel Quiat et al.   JOURNAL OF CLINICAL INVESTIGATION

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis

(2013) Teck Yew Low et al.   Cell Reports

Gut Microbiota Metabolism of Anthocyanin Promotes Reverse Cholesterol Transport in Mice Via Repressing miRNA-10b

(2012) Dongliang Wang et al.   CIRCULATION RESEARCH

Linking disease associations with regulatory information in the human genome

(2012) M. A. Schaub et al.   GENOME RESEARCH

MicroRNA expression patterns in the bovine mammary gland are affected by stage of lactation1

(2012) M. Wang et al.   JOURNAL OF DAIRY SCIENCE

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Improved linear mixed models for genome-wide association studies

(2012) Jennifer Listgarten et al.   NATURE METHODS

miRmap: Comprehensive prediction of microRNA target repression strength

(2012) Charles E. Vejnar et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Transcriptional profiling of the bovine hepatic response to experimentally induced E. coli mastitis

(2012) Hanne B. H. Jørgensen et al.   PHYSIOLOGICAL GENOMICS

Gene set analysis of SNP data: benefits, challenges, and future directions

(2011) Brooke L Fridley et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Pathway-based analysis of GWAS datasets: effective but caution required

(2011) Peilin Jia et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

Argonaute proteins at a glance

(2010) C. Ender et al.   JOURNAL OF CELL SCIENCE

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Using genetic architecture to improve predictions

(2010) Meera Swami   NATURE REVIEWS GENETICS

Gene Ontology Analysis of GWA Study Data Sets Provides Insights into the Biology of Bipolar Disorder

(2009) Peter Holmans et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Role of microRNAs in vascular diseases, inflammation, and angiogenesis

(2008) C. Urbich et al.   CARDIOVASCULAR RESEARCH

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH