Gene Regulation Mediated by microRNA-Triggered Secondary Small RNAs in Plants

24-nt reproductive phasiRNAs are broadly present in angiosperms

(2019) Rui Xia et al.   Nature Communications

Genome-wide identification and comprehensive analysis of microRNAs and phased small interfering RNAs in watermelon

(2018) Li Liu et al.   BMC GENOMICS

Biogenesis and regulatory hierarchy of phased small interfering RNAs in plants

(2018) Pingchuan Deng et al.   PLANT BIOTECHNOLOGY JOURNAL

Biogenesis of a 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation

(2018) Qili Fei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MIGS as a Simple and Efficient Method for Gene Silencing in Rice

(2018) Xuelian Zheng et al.   Frontiers in Plant Science

Artificial microRNAs and synthetic trans -acting small interfering RNAs interfere with viroid infection

(2017) Alberto Carbonell et al.   MOLECULAR PLANT PATHOLOGY

A single miR390 targeting event is sufficient for triggering TAS3-tasiRNA biogenesis in Arabidopsis

(2017) Felipe Fenselau de Felippes et al.   NUCLEIC ACIDS RESEARCH

SRNAome and degradome sequencing analysis reveals specific regulation of sRNA in response to chilling injury in tomato fruit

(2017) Jinhua Zuo et al.   PHYSIOLOGIA PLANTARUM

miR3954 is a trigger of phasiRNAs that affects flowering time in citrus

(2017) Yuanlong Liu et al.   PLANT JOURNAL

The functions of plant small RNAs in development and in stress responses

(2017) Shengjun Li et al.   PLANT JOURNAL

Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation

(2017) Jérémie Bazin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Slicer Activity of ARGONAUTE1 is Required Specifically for the Phasing, Not Production, of Trans-Acting Short Interfering RNAs in Arabidopsis

(2016) Laura Arribas-Hernández et al.   PLANT CELL

Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants

(2016) Cheng‐Yu Hou et al.   PLANT CELL

DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function

(2016) Nathan Pumplin et al.   PLANT CELL

Novel constructs for efficient cloning of sRNA-encoding DNA and uniform silencing of plant genes employing artificial trans-acting small interfering RNA

(2016) Ulku Baykal et al.   PLANT CELL REPORTS

A Short Open Reading Frame Encompassing the MicroRNA173 Target Site Plays a Role in trans-Acting Small Interfering RNA Biogenesis

(2016) Manabu Yoshikawa et al.   PLANT PHYSIOLOGY

Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis

(2016) Shengben Li et al.   eLife

Extensive Families of miRNAs andPHASLoci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants

(2015) Rui Xia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simple gene silencing using the trans-acting siRNA pathway

(2015) Thomas B. Jacobs et al.   PLANT BIOTECHNOLOGY JOURNAL

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigation of a miRNA-Induced Gene Silencing Technique in Petunia Reveals Alterations in miR173 Precursor Processing and the Accumulation of Secondary siRNAs from Endogenous Genes

(2015) Yao Han et al.   PLoS One

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis

(2014) A. Carbonell et al.   PLANT PHYSIOLOGY

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development

(2014) Xueying Guan et al.   Nature Communications

tasiRNA-ARF Pathway Moderates Floral Architecture inArabidopsisPlants Subjected to Drought Stress

(2014) Akihiro Matsui et al.   Biomed Research International

Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly

(2013) Yayoi Endo et al.   EMBO REPORTS

The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula

(2013) N. Imin et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots

(2013) Rui Xia et al.   PLANT CELL

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Arabidopsis Phosphoglycerate Dehydrogenase1 of the Phosphoserine Pathway Is Essential for Development and Required for Ammonium Assimilation and Tryptophan Biosynthesis

(2013) R. M. Benstein et al.   PLANT CELL

A 22-nt artificial microRNA mediates widespread RNA silencing inArabidopsis

(2013) Marcus McHale et al.   PLANT JOURNAL

3' fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS3

(2013) M. Yoshikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of trans-acting siRNAs and their regulatory cascades in grapevine

(2012) Changqing Zhang et al.   BIOINFORMATICS

Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis

(2012) Virginie Jouannet et al.   EMBO JOURNAL

DICER-LIKE3 Activity in Physcomitrella patens DICER-LIKE4 Mutants Causes Severe Developmental Dysfunction and Sterility

(2012) M. Asif Arif et al.   Molecular Plant

Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis

(2012) Rajendran Rajeswaran et al.   NUCLEIC ACIDS RESEARCH

SoMART: a web server for plant miRNA, tasiRNA and target gene analysis

(2012) Feng Li et al.   PLANT JOURNAL

Plant secondary siRNA production determined by microRNA-duplex structure

(2012) P. A. Manavella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Roles of target site location and sequence complementarity in trans-acting siRNA formation in Arabidopsis

(2011) Changqing Zhang et al.   PLANT JOURNAL

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

MIGS: miRNA-induced gene silencing

(2011) Felipe Fenselau de Felippes et al.   PLANT JOURNAL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana

(2010) Felipe Fenselau de Felippes et al.   NUCLEIC ACIDS RESEARCH

The Conserved RNA Trafficking Proteins HPR1 and TEX1 Are Involved in the Production of Endogenous and Exogenous Small Interfering RNA in Arabidopsis

(2010) V. Jauvion et al.   PLANT CELL

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis

(2010) N. E. Yelina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173

(2009) Felipe F Felippes et al.   EMBO REPORTS

A neomorphic sgs3 allele stabilizing miRNA cleavage products reveals that SGS3 acts as a homodimer

(2009) Taline Elmayan et al.   FEBS Journal

SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies

(2009) Naoyoshi Kumakura et al.   FEBS LETTERS

Pattern formation via small RNA mobility

(2009) D. H. Chitwood et al.   GENES & DEVELOPMENT

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Novel miR390-Dependent Transacting siRNA Precursors in Plants Revealed by a PCR-Based Experimental Approach and Database Analysis

(2009) M. S. Krasnikova et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families

(2009) Guru Jagadeeswaran et al.   NEW PHYTOLOGIST

Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development

(2009) Eun Kyung Yoon et al.   NUCLEIC ACIDS RESEARCH

Endogenous TasiRNAs Mediate Non-Cell Autonomous Effects on Gene Regulation in Arabidopsis thaliana

(2009) Rebecca Schwab et al.   PLoS One

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

Structure of the guide-strand-containing argonaute silencing complex

(2008) Yanli Wang et al.   NATURE

The Mechanism Selecting the Guide Strand from Small RNA Duplexes is Different Among Argonaute Proteins

(2008) Atsushi Takeda et al.   PLANT AND CELL PHYSIOLOGY

Gene silencing in plants using artificial microRNAs and other small RNAs

(2008) Stephan Ossowski et al.   PLANT JOURNAL

Artificial trans-Acting siRNAs Confer Consistent and Effective Gene Silencing

(2008) M. de la Luz Gutierrez-Nava et al.   PLANT PHYSIOLOGY

AGO1-miR173 complex initiates phased siRNA formation in plants

(2008) T. A. Montgomery et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA