The functions of plant small RNAs in development and in stress responses

Ready, aim, shoot: stem cell regulation of the shoot apical meristem

(2016) Cara L Soyars et al.   CURRENT OPINION IN PLANT BIOLOGY

Small RNAs Add Zing to the Zig-Zag-Zig Model of Plant Defenses

(2016) Qili Fei et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The miR396b ofPoncirus trifoliataFunctions in Cold Tolerance by Regulating ACC Oxidase Gene Expression and Modulating Ethylene–Polyamine Homeostasis

(2016) Xiaona Zhang et al.   PLANT AND CELL PHYSIOLOGY

Auxin-mediated lamina growth in tomato leaves is restricted by two parallel mechanisms

(2016) Hadas Ben-Gera et al.   PLANT JOURNAL

Expanding the Regulatory Network for Meristem Size in Plants

(2016) Mary Galli et al.   TRENDS IN GENETICS

Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice

(2016) Jian Huang et al.   Scientific Reports

A cotton miRNA is involved in regulation of plant response to salt stress

(2016) Shuai Gao et al.   Scientific Reports

Compound leaf development in model plant species

(2015) Maya Bar et al.   CURRENT OPINION IN PLANT BIOLOGY

Recent developments in arbuscular mycorrhizal signaling

(2015) Enrico Gobbato   CURRENT OPINION IN PLANT BIOLOGY

Antiviral roles of plant ARGONAUTES

(2015) Alberto Carbonell et al.   CURRENT OPINION IN PLANT BIOLOGY

miR408 overexpression causes increased drought tolerance in chickpea

(2015) Mortaza Hajyzadeh et al.   GENE

Role of cin-miR2118 in drought stress responses in Caragana intermedia and Tobacco

(2015) Bi-fei Wu et al.   GENE

To Bloom or Not to Bloom: Role of MicroRNAs in Plant Flowering

(2015) Sachin Teotia et al.   Molecular Plant

A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants

(2015) Xingliang Ma et al.   Molecular Plant

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Functional dissection of a plant Argonaute

(2015) Károly Fátyol et al.   NUCLEIC ACIDS RESEARCH

Cleavage ofINDOLE-3-ACETIC ACID INDUCIBLE28mRNA by MicroRNA847 Upregulates Auxin Signaling to Modulate Cell Proliferation and Lateral Organ Growth in Arabidopsis

(2015) Jing-Jing Wang et al.   PLANT CELL

Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development

(2015) Katherine Petsch et al.   PLANT CELL

MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots

(2015) Ramiro E. Rodriguez et al.   PLANT CELL

Sp-miR396a-5p acts as a stress-responsive genes regulator by conferring tolerance to abiotic stresses and susceptibility to Phytophthora nicotianae infection in transgenic tobacco

(2015) Lei Chen et al.   PLANT CELL REPORTS

The microRNA167 controls somatic embryogenesis in Arabidopsis through regulating its target genes ARF6 and ARF8

(2015) Ying Hua Su et al.   PLANT CELL TISSUE AND ORGAN CULTURE

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

Constitutive Expression of RiceMicroRNA528Alters Plant Development and Enhances Tolerance to Salinity Stress and Nitrogen Starvation in Creeping Bentgrass

(2015) Shuangrong Yuan et al.   PLANT PHYSIOLOGY

MicroRNA167-Directed Regulation of the Auxin Response FactorsGmARF8aandGmARF8bIs Required for Soybean Nodulation and Lateral Root Development

(2015) Youning Wang et al.   PLANT PHYSIOLOGY

The Micro-RNA172c-APETALA2-1 Node as a Key Regulator of the Common Bean-Rhizobium etliNitrogen Fixation Symbiosis

(2015) Bárbara Nova-Franco et al.   PLANT PHYSIOLOGY

miRNA778 and SUVH6 are involved in phosphate homeostasis in Arabidopsis

(2015) Lei Wang et al.   PLANT SCIENCE

Phytophthoraeffector targets a novel component of small RNA pathway in plants to promote infection

(2015) Yongli Qiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mungbean yellow mosaic Indian virus encoded AC2 protein suppresses RNA silencing by inhibiting Arabidopsis RDR6 and AGO1 activities

(2015) Vikash Kumar et al.   VIROLOGY

viral silencing suppressors: Tools forged to fine-tune host-pathogen coexistence

(2015) Tibor Csorba et al.   VIROLOGY

Spatiotemporal Sequestration of miR165/166 by Arabidopsis Argonaute10 Promotes Shoot Apical Meristem Maintenance

(2015) Yuyi Zhou et al.   Cell Reports

New insights into pri-miRNA processing and accumulation in plants

(2015) Shuxin Zhang et al.   Wiley Interdisciplinary Reviews-RNA

Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA

(2015) Jianguo Wu et al.   eLife

Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice

(2015) Penggen Duan et al.   Nature Plants

Temporal Control of Leaf Complexity by miRNA-Regulated Licensing of Protein Complexes

(2014) Ignacio Rubio-Somoza et al.   CURRENT BIOLOGY

Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice

(2014) Yujie Fang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Repression of Cell Proliferation by miR319-Regulated TCP4

(2014) Carla Schommer et al.   Molecular Plant

Control of plant stem cell function by conserved interacting transcriptional regulators

(2014) Yun Zhou et al.   NATURE

HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis

(2014) S. Li et al.   PLANT CELL

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

Soybean miR172c Targets the Repressive AP2 Transcription Factor NNC1 to ActivateENOD40Expression and Regulate Nodule Initiation

(2014) Youning Wang et al.   PLANT CELL

An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes

(2014) Siwaret Arikit et al.   PLANT CELL

Auxin Perception Is Required for Arbuscule Development in Arbuscular Mycorrhizal Symbiosis

(2014) Mohammad Etemadi et al.   PLANT PHYSIOLOGY

Global Regulation of Embryonic Patterning in Arabidopsis by MicroRNAs

(2014) W. F. Seefried et al.   PLANT PHYSIOLOGY

MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.)

(2014) Sun-ting Wang et al.   PLoS One

Synchronization of Developmental Processes and Defense Signaling by Growth Regulating Transcription Factors

(2014) Jinyi Liu et al.   PLoS One

MiR393 Regulation of Auxin Signaling and Redox-Related Components during Acclimation to Salinity in Arabidopsis

(2014) María José Iglesias et al.   PLoS One

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development

(2014) Xueying Guan et al.   Nature Communications

Interaction between Two Timing MicroRNAs Controls Trichome Distribution in Arabidopsis

(2014) Xue-Yi Xue et al.   PLoS Genetics

Structural insights into the arms race between host and virus along RNA silencing pathways inArabidopsis thaliana

(2013) Wei Guo et al.   BIOLOGICAL REVIEWS

miR394 and LCR are involved in Arabidopsis salt and drought stress responses in an abscisic acid-dependent manner

(2013) Jian Song et al.   BMC PLANT BIOLOGY

MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis

(2013) Shengben Li et al.   CELL

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Rice yellow stunt rhabdovirusProtein 6 Suppresses Systemic RNA Silencing by Blocking RDR6-Mediated Secondary siRNA Synthesis

(2013) Hongyan Guo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

(2013) Yu-Chan Zhang et al.   NATURE BIOTECHNOLOGY

Oomycete pathogens encode RNA silencing suppressors

(2013) Yongli Qiao et al.   NATURE GENETICS

RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence

(2013) Nathan Pumplin et al.   NATURE REVIEWS MICROBIOLOGY

Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1

(2013) Hongliang Zhu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Comprehensive Expression Analysis of the Arabidopsis MICRORNA165/6 Gene Family during Embryogenesis Reveals a Conserved Role in Meristem Specification and a Non-Cell-Autonomous Function

(2013) Shunsuke Miyashima et al.   PLANT AND CELL PHYSIOLOGY

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

miR396 affects mycorrhization and root meristem activity in the legumeMedicago truncatula

(2013) Jérémie Bazin et al.   PLANT JOURNAL

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

Two Young MicroRNAs Originating from Target Duplication Mediate Nitrogen Starvation Adaptation via Regulation of Glucosinolate Synthesis in Arabidopsis thaliana

(2013) H. He et al.   PLANT PHYSIOLOGY

Ectopic Expression of miR160 Results in Auxin Hypersensitivity, Cytokinin Hyposensitivity, and Inhibition of Symbiotic Nodule Development in Soybean

(2013) M. Turner et al.   PLANT PHYSIOLOGY

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C

(2013) Li Yang et al.   eLife

Sugar is an endogenous cue for juvenile-to-adult phase transition in plants

(2013) Sha Yu et al.   eLife

Control ofArabidopsisRoot Development

(2012) Jalean J. Petricka et al.   Annual Review of Plant Biology

miRNA164-directed cleavage of ZmNAC1 confers lateral root development in maize (Zea mays L.)

(2012) Jing Li et al.   BMC PLANT BIOLOGY

Argonautes compete for miR165/166 to regulate shoot apical meristem development

(2012) Zhonghui Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

HYL1 controls the miR156-mediated juvenile phase of vegetative growth

(2012) Shuxia Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Temperature-Dependent Survival of Turnip Crinkle Virus-Infected Arabidopsis Plants Relies on an RNA Silencing-Based Defense That Requires DCL2, AGO2, and HEN1

(2012) X. Zhang et al.   JOURNAL OF VIROLOGY

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)

(2012) Hongwu Bian et al.   NEW PHYTOLOGIST

Identification of new microRNA-regulated genes by conserved targeting in plant species

(2012) Uciel Chorostecki et al.   NUCLEIC ACIDS RESEARCH

The microRNA miR171h modulates arbuscular mycorrhizal colonization ofMedicago truncatulaby targetingNSP2

(2012) Dominique Lauressergues et al.   PLANT JOURNAL

TamiR159 Directed Wheat TaGAMYB Cleavage and Its Involvement in Anther Development and Heat Response

(2012) Yu Wang et al.   PLoS One

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development

(2011) Hongliang Zhu et al.   CELL

Plant targets for Pseudomonas syringae type III effectors: virulence targets or guarded decoys?

(2011) Anna Block et al.   CURRENT OPINION IN MICROBIOLOGY

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

(2011) N. W. Breakfield et al.   GENOME RESEARCH

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

(2011) Xiaoming Zhang et al.   MOLECULAR CELL

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

(2011) Meng Zhao et al.   NEW PHYTOLOGIST

RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA

(2011) Rajendran Rajeswaran et al.   NUCLEIC ACIDS RESEARCH

The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana

(2011) Xian-Bing Wang et al.   PLANT CELL

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis

(2011) Zhe-Hao Chen et al.   PLANT MOLECULAR BIOLOGY

LEAF TIP NECROSIS1 Plays a Pivotal Role in the Regulation of Multiple Phosphate Starvation Responses in Rice

(2011) B. Hu et al.   PLANT PHYSIOLOGY

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis

(2011) Surya Kant et al.   PLoS Genetics

Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation

(2010) Éva Várallyay et al.   EMBO JOURNAL

Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of thesftmutant

(2010) Xiaohui Zhang et al.   FEBS LETTERS

MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis

(2010) M. D. Nodine et al.   GENES & DEVELOPMENT

Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein

(2010) J. Azevedo et al.   GENES & DEVELOPMENT

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis

(2010) Long Wang et al.   Molecular Plant

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

MicroRNA402 Affects Seed Germination of Arabidopsis thaliana Under Stress Conditions via Targeting DEMETER-LIKE Protein3 mRNA

(2010) J. Y. Kim et al.   PLANT AND CELL PHYSIOLOGY

Temporal Control of Trichome Distribution by MicroRNA156-Targeted SPL Genes in Arabidopsis thaliana

(2010) N. Yu et al.   PLANT CELL

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1

(2010) Tibor Csorba et al.   PLANT JOURNAL

Misexpression of miR482, miR1512, and miR1515 Increases Soybean Nodulation

(2010) H. Li et al.   PLANT PHYSIOLOGY

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)

(2009) Qian-Hao Zhu et al.   BMC PLANT BIOLOGY

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Repression of Apical Homeobox Genes Is Required for Embryonic Root Development in Arabidopsis

(2009) Stephen P. Grigg et al.   CURRENT BIOLOGY

Control of cell proliferation in Arabidopsis thaliana by microRNA miR396

(2009) R. E. Rodriguez et al.   DEVELOPMENT

Pattern formation via small RNA mobility

(2009) D. H. Chitwood et al.   GENES & DEVELOPMENT

Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development

(2009) Eun Kyung Yoon et al.   NUCLEIC ACIDS RESEARCH

SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis

(2009) H. Yamasaki et al.   PLANT CELL

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis

(2009) Clayton T. Larue et al.   PLANT JOURNAL

Nuclear import of CaMV P6 is required for infection and suppression of the RNA silencing factor DRB4

(2008) Gabrielle Haas et al.   EMBO JOURNAL

MicroRNA-mediated Systemic Down-regulation of Copper Protein Expression in Response to Low Copper Availability inArabidopsis

(2008) Salah E. Abdel-Ghany et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Dual Effects of miR156-Targeted SPL Genes and CYP78A5/KLUH on Plastochron Length and Organ Size in Arabidopsis thaliana

(2008) J.-W. Wang et al.   PLANT CELL

Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots

(2008) OSWALDO VALDÉS-LÓPEZ et al.   PLANT CELL AND ENVIRONMENT

The ARGONAUTE10 gene modulates shoot apical meristem maintenance and establishment of leaf polarity by repressing miR165/166 in Arabidopsis

(2008) Qili Liu et al.   PLANT JOURNAL

MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis

(2008) Bikram Datt Pant et al.   PLANT JOURNAL

Identification and characterization of small RNAs from the phloem of Brassica napus

(2008) Anja Buhtz et al.   PLANT JOURNAL

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types

(2008) Cintia Goulart Kawashima et al.   PLANT JOURNAL

The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis

(2008) Stefan Schwarz et al.   PLANT MOLECULAR BIOLOGY

Developmental Role and Auxin Responsiveness of Class III Homeodomain Leucine Zipper Gene Family Members in Rice

(2008) J.-I. Itoh et al.   PLANT PHYSIOLOGY

Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1

(2008) F. Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Suppression of the MicroRNA Pathway by Bacterial Effector Proteins

(2008) L. Navarro et al.   SCIENCE