Metagenomic Insights into the Bacterial Functions of a Diesel-Degrading Consortium for the Rhizoremediation of Diesel-Polluted Soil

Hydrocarbon-degrading bacteria in deep-water subarctic sediments (Faroe-Shetland Channel)

(2018) Evangelia Gontikaki et al.   JOURNAL OF APPLIED MICROBIOLOGY

Metagenomic Analysis of a Biphenyl-Degrading Soil Bacterial Consortium Reveals the Metabolic Roles of Specific Populations

(2018) Daniel Garrido-Sanz et al.   Frontiers in Microbiology

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase

(2017) Daniel J. Ferraro et al.   IUCrJ

Selection of oxidant doses for in situ chemical oxidation of soils contaminated by polycyclic aromatic hydrocarbons (PAHs): A review

(2016) B. Ranc et al.   JOURNAL OF HAZARDOUS MATERIALS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Occurrence of diverse alkane hydroxylase alkB genes in indigenous oil-degrading bacteria of Baltic Sea surface water

(2015) Signe Viggor et al.   MARINE POLLUTION BULLETIN

Ecological implications of motor oil pollution: Earthworm survival and soil health

(2015) Kavitha Ramadass et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pseudomonads Rule Degradation of Polyaromatic Hydrocarbons in Aerated Sediment

(2015) Jiri Wald et al.   Frontiers in Microbiology

An analytical method for quantifying petroleum hydrocarbon fractions in soils, and its associated uncertainties

(2014) Oscar Pindado Jiménez et al.   Analytical Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Structural insights into diversity and n-alkane biodegradation mechanisms of alkane hydroxylases

(2013) Yurui Ji et al.   Frontiers in Microbiology

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Emission factors for heavy metals from diesel and petrol used in European vehicles

(2012) Tinus Pulles et al.   ATMOSPHERIC ENVIRONMENT

Toxicity assessment for petroleum-contaminated soil using terrestrial invertebrates and plant bioassays

(2012) Olfa Hentati et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

An evaluation of analytical quality for selected PAH measurements in a fuel-contaminated soil

(2011) S. García-Alonso et al.   ACCREDITATION AND QUALITY ASSURANCE

Regioselective ω-hydroxylation of medium-chain n-alkanes and primary alcohols by CYP153 enzymes from Mycobacterium marinum and Polaromonas sp. strain JS666

(2011) Daniel Scheps et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

(2011) Henrique Fragoso dos Santos et al.   PLoS One

Assessment of five bioaccessibility assays for predicting the efficacy of petroleum hydrocarbon biodegradation in aged contaminated soils

(2010) Catherine E. Dandie et al.   CHEMOSPHERE

Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: A review

(2010) Somnath Mallick et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Functional analysis of long-chain n-alkane degradation by Dietzia spp.

(2010) Zoltán Bihari et al.   FEMS MICROBIOLOGY LETTERS

Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms

(2010) Giulio Zanaroli et al.   Microbial Cell Factories

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Full-Scale Remediation of a Jet Fuel-Contaminated Soil: Assessment of Biodegradation, Volatilization, and Bioavailability

(2010) José Luis R. Gallego et al.   WATER AIR AND SOIL POLLUTION

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Benzo[a]pyrene degradation by Sphingomonas yanoikuyae JAR02

(2007) Jeremy A. Rentz et al.   ENVIRONMENTAL POLLUTION

Crystal Structure of Long-Chain Alkane Monooxygenase (LadA) in Complex with Coenzyme FMN: Unveiling the Long-Chain Alkane Hydroxylase

(2007) Liu Li et al.   JOURNAL OF MOLECULAR BIOLOGY