Transcriptome analysis and codominant markers development in caper, a drought tolerant orphan crop with medicinal value
出版年份 2019 全文链接
标题
Transcriptome analysis and codominant markers development in caper, a drought tolerant orphan crop with medicinal value
作者
关键词
-
出版物
Scientific Reports
Volume 9, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-07-18
DOI
10.1038/s41598-019-46613-x
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses
- (2018) Anirudha Dixit et al. PLANT CELL AND ENVIRONMENT
- Downregulation of stress-associated protein 1 (PagSAP1) increases salt stress tolerance in poplar (Populus alba × P. glandulosa)
- (2018) Seo-Kyung Yoon et al. TREES-STRUCTURE AND FUNCTION
- New approach for understanding genome variations in KEGG
- (2018) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis stress associated protein 9 mediates biotic and abiotic stress responsive ABA signaling via the proteasome pathway
- (2017) Miyoung Kang et al. PLANT CELL AND ENVIRONMENT
- Differential gene expression in leaf tissues between mutant and wild-type genotypes response to late leaf spot in peanut (Arachis hypogaea L.)
- (2017) Suoyi Han et al. PLoS One
- The asparagus genome sheds light on the origin and evolution of a young Y chromosome
- (2017) Alex Harkess et al. Nature Communications
- A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
- (2017) Donald M. Bryant et al. Cell Reports
- Capparis spinosa L. in A Systematic Review: A Xerophilous Species of Multi Values and Promising Potentialities for Agrosystems under the Threat of Global Warming
- (2017) Stephanie Chedraoui et al. Frontiers in Plant Science
- Dual regulation of water retention and cell growth by a stress-associated protein (SAP) gene in Prunus
- (2017) Alba Lloret et al. Scientific Reports
- Chlorogenic acids, caffeine content and antioxidant properties of green coffee extracts: influence of green coffee bean preparation
- (2016) Magdalena Jeszka-Skowron et al. EUROPEAN FOOD RESEARCH AND TECHNOLOGY
- Urgent need for preservation of grapevine (Vitis vinifera L. subsp. vinifera) germplasm from small circum-Sicilian islands as revealed by SSR markers and traditional use investigations
- (2016) Alessandro Silvestre Gristina et al. GENETIC RESOURCES AND CROP EVOLUTION
- How can we improve crop genotypes to increase stress resilience and productivity in a future climate? A new crop screening method based on productivity and resistance to abiotic stress
- (2016) Arnauld A. Thiry et al. JOURNAL OF EXPERIMENTAL BOTANY
- Allantoin, a stress-related purine metabolite, can activate jasmonate signaling in a MYC2-regulated and abscisic acid-dependent manner
- (2016) Hiroshi Takagi et al. JOURNAL OF EXPERIMENTAL BOTANY
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Antioxidant and antitumor activities of Capparis spinosa L. and the related mechanisms
- (2016) Lei Yu et al. ONCOLOGY REPORTS
- Pharmacological Effects ofCapparis spinosaL.
- (2016) Seyed Fazel Nabavi et al. PHYTOTHERAPY RESEARCH
- Lipid signalling in plant responses to abiotic stress
- (2016) Quancan Hou et al. PLANT CELL AND ENVIRONMENT
- Phylogeographic Structure of a Tethyan RelictCapparis spinosa(Capparaceae) Traces Pleistocene Geologic and Climatic Changes in the Western Himalayas, Tianshan Mountains, and Adjacent Desert Regions
- (2016) Qian Wang et al. Biomed Research International
- Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protection under Abiotic Stress
- (2016) Vicente Martinez et al. Frontiers in Plant Science
- Comparative Analysis of GC Content Variations in Plant Genomes
- (2016) Ratnesh Singh et al. Tropical Plant Biology
- RNA-seq based transcriptomic analysis uncovers α-linolenic acid and jasmonic acid biosynthesis pathways respond to cold acclimation in Camellia japonica
- (2016) Qingyuan Li et al. Scientific Reports
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Patterns of SSR variation in bread wheat (Triticum aestivum L.) seeds under ex situ genebank storage and accelerated ageing
- (2015) Yong-Bi Fu et al. GENETIC RESOURCES AND CROP EVOLUTION
- Capparis species: A potential source of bioactives and high-value components: A review
- (2015) Tehseen Gull et al. INDUSTRIAL CROPS AND PRODUCTS
- Effects ofPHENYLALANINE AMMONIA LYASE(PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses inBrachypodium
- (2015) Cynthia L. Cass et al. JOURNAL OF EXPERIMENTAL BOTANY
- Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis)
- (2015) Alex Harkess et al. NEW PHYTOLOGIST
- Transcription co-activatorArabidopsisANGUSTIFOLIA3 (AN3) regulates water-use efficiency and drought tolerance by modulating stomatal density and improving root architecture by the transrepression ofYODA(YDA)
- (2015) Lai-Sheng Meng et al. PLANT BIOTECHNOLOGY JOURNAL
- Climate variation explains a third of global crop yield variability
- (2015) Deepak K. Ray et al. Nature Communications
- Response and adaptation of photosynthesis, respiration, and antioxidant systems to elevated CO2 with environmental stress in plants
- (2015) Zhenzhu Xu et al. Frontiers in Plant Science
- Salicylic acid-induced abiotic stress tolerance and underlying mechanisms in plants
- (2015) M. Iqbal R. Khan et al. Frontiers in Plant Science
- De Novo Assembly and Characterization of Fruit Transcriptome in Black Pepper (Piper nigrum)
- (2015) Lisong Hu et al. PLoS One
- Phytotoxic activity of Cachrys pungens Jan, a mediterranean species: separation, identification and quantification of potential allelochemicals
- (2014) Fabrizio Araniti et al. ACTA PHYSIOLOGIAE PLANTARUM
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Hybridization in Capparis spinosa L.: Molecular and morphological evidence from a Mediterranean island complex
- (2014) Alessandro Silvestre Gristina et al. FLORA
- Genetic variation of an Italian long shelf-life tomato (Solanum lycopersicon L.) collection by using SSR and morphological fruit traits
- (2014) Francesco Mercati et al. GENETIC RESOURCES AND CROP EVOLUTION
- Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea
- (2014) Felix Grewe et al. MITOCHONDRION
- Salicylic acid signaling in disease resistance
- (2014) Dhirendra Kumar PLANT SCIENCE
- Transcriptome Analysis of Houttuynia cordata Thunb. by Illumina Paired-End RNA Sequencing and SSR Marker Discovery
- (2014) Lin Wei et al. PLoS One
- A taxonomic revision of the Capparis spinosa group (Capparaceae) from the Mediterranean to Central Asia
- (2014) Silvio Fici Phytotaxa
- Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
- (2014) Zhian N. Kamvar et al. PeerJ
- A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads
- (2014) Stanley Kimbung Mbandi et al. Frontiers in Genetics
- On the optimal trimming of high-throughput mRNA sequence data
- (2014) Matthew D. MacManes Frontiers in Genetics
- Calamintha nepeta L. (Savi) as source of phytotoxic compounds: bio-guided fractionation in identifying biological active molecules
- (2013) Fabrizio Araniti et al. ACTA PHYSIOLOGIAE PLANTARUM
- SAPs as novel regulators of abiotic stress response in plants
- (2013) Jitender Giri et al. BIOESSAYS
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Action of jasmonates in plant stress responses and development — Applied aspects
- (2013) Claus Wasternack BIOTECHNOLOGY ADVANCES
- Capparis spinosa L. (Caper) fruit extract in treatment of type 2 diabetic patients: A randomized double-blind placebo-controlled clinical trial
- (2013) Hassan Fallah Huseini et al. COMPLEMENTARY THERAPIES IN MEDICINE
- Temperature response of photosynthesis in C3, C4, and CAM plants: temperature acclimation and temperature adaptation
- (2013) Wataru Yamori et al. PHOTOSYNTHESIS RESEARCH
- Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.)
- (2013) Francesco Mercati et al. PLANT SCIENCE
- Genetic variation in natural populations of Capparis from Turkey, as revealed by RAPD analysis
- (2013) Özlem Özbek et al. PLANT SYSTEMATICS AND EVOLUTION
- Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly
- (2013) Takayuki Yazawa et al. PLoS One
- De Novo Assembly and Characterization of the Transcriptome, and Development of SSR Markers in Wax Gourd (Benicasa hispida)
- (2013) Biao Jiang et al. PLoS One
- Plant tolerance to high temperature in a changing environment: scientific fundamentals and production of heat stress-tolerant crops
- (2013) Craita E. Bita et al. Frontiers in Plant Science
- Catalyzing plant science research with RNA-seq
- (2013) Laetitia B. B. Martin et al. Frontiers in Plant Science
- Antiquorum Sensing and Antibiofilm Potential of Capparis spinosa
- (2012) Sybiya Vasantha Packiavathy Issac Abraham et al. ARCHIVES OF MEDICAL RESEARCH
- Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra)
- (2012) Yun Jiao et al. BMC GENOMICS
- Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq
- (2012) Chao Feng et al. BMC GENOMICS
- Identification and characterization of gene-based SSR markers in date palm (Phoenix dactylifera L.)
- (2012) Yongli Zhao et al. BMC PLANT BIOLOGY
- Nematicidal Activity of 2-Thiophenecarboxaldehyde and Methylisothiocyanate from Caper (Capparis spinosa) against Meloidogyne incognita
- (2012) Pierluigi Caboni et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Improved Growth and Stress Tolerance in the Arabidopsis oxt1 Mutant Triggered by Altered Adenine Metabolism
- (2012) Suchada Sukrong et al. Molecular Plant
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- Studies in the Cleomaceae I. On the Separate Recognition of Capparaceae, Cleomaceae, and Brassicaceae1
- (2011) Hugh H Iltis et al. ANNALS OF THE MISSOURI BOTANICAL GARDEN
- adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
- (2011) Thibaut Jombart et al. BIOINFORMATICS
- Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers
- (2011) Wenliang Wei et al. BMC GENOMICS
- Intra-varietal genetic diversity of the grapevine (Vitis vinifera L.) cultivar ‘Nero d’Avola’ as revealed by microsatellite markers
- (2011) Francesco Carimi et al. GENETIC RESOURCES AND CROP EVOLUTION
- Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C3 and C4 species
- (2011) Andrea Bräutigam et al. JOURNAL OF EXPERIMENTAL BOTANY
- Chemical Composition and In Vitro Activity of Plant Extracts from Ferula communis and Dittrichia viscosa against Postharvest Fungi
- (2011) Erjon Mamoci et al. MOLECULES
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- In vitro plant regeneration of caper (Capparis spinosa L.) from floral explants and genetic stability of regenerants
- (2011) Angela Carra et al. PLANT CELL TISSUE AND ORGAN CULTURE
- RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
- (2011) Zhihui Xia et al. PLANT MOLECULAR BIOLOGY
- Genome-Wide Functional Analysis of the Cotton Transcriptome by Creating an Integrated EST Database
- (2011) Fuliang Xie et al. PLoS One
- CD-HIT Suite: a web server for clustering and comparing biological sequences
- (2010) Ying Huang et al. BIOINFORMATICS
- Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
- (2010) Thomas L Parchman et al. BMC GENOMICS
- Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
- (2010) Shaohua Zeng et al. BMC GENOMICS
- The caper (Capparis L.): Ethnopharmacology, phytochemical and pharmacological properties
- (2010) Nizar Tlili et al. FITOTERAPIA
- Applications of next generation sequencing in molecular ecology of non-model organisms
- (2010) R Ekblom et al. HEREDITY
- Anti-inflammatory Effects of Caper (Capparis spinosa L.) Fruit Aqueous Extract and the Isolation of Main Phytochemicals
- (2010) Haifeng Zhou et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Phosphatidic acid mediates salt stress response by regulation of MPK6 in Arabidopsis thaliana
- (2010) Lijuan Yu et al. NEW PHYTOLOGIST
- Thiamine in plants: Aspects of its metabolism and functions
- (2010) Aymeric Goyer PHYTOCHEMISTRY
- Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance
- (2010) Sangram K. Lenka et al. PLANT BIOTECHNOLOGY JOURNAL
- Plant PA signaling via diacylglycerol kinase
- (2009) Steven A. Arisz et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS
- Phospholipase D 1 and Phosphatidic Acid Regulate NADPH Oxidase Activity and Production of Reactive Oxygen Species in ABA-Mediated Stomatal Closure in Arabidopsis
- (2009) Y. Zhang et al. PLANT CELL
- Thiamin Confers Enhanced Tolerance to Oxidative Stress in Arabidopsis
- (2009) M. Tunc-Ozdemir et al. PLANT PHYSIOLOGY
- Systematics of Capparaceae and Cleomaceae: an evaluation of the generic delimitations of Capparis and Cleome using plastid DNA sequence dataThis paper is one of a selection of papers published in the Special Issue on Systematics Research.
- (2008) Jocelyn C. Hall Botany
- Modulation of thiamine metabolism in Zea mays seedlings under conditions of abiotic stress
- (2008) M. Rapala-Kozik et al. JOURNAL OF EXPERIMENTAL BOTANY
- Dual Functions of Phospholipase Dα1 in Plant Response to Drought
- (2008) Yueyun Hong et al. Molecular Plant
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- KEGG Atlas mapping for global analysis of metabolic pathways
- (2008) S. Okuda et al. NUCLEIC ACIDS RESEARCH
- A protein with antiproliferative, antifungal and HIV-1 reverse transcriptase inhibitory activities from caper (Capparis spinosa) seeds
- (2008) Sze-Kwan Lam et al. PHYTOMEDICINE
- Development of specific primers for cpSSR analysis in caper, olive and grapevine using consensus chloroplast primer pairs
- (2008) Mirko Siragusa et al. SCIENTIA HORTICULTURAE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More