Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
出版年份 2019 全文链接
标题
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
作者
关键词
-
出版物
SCIENCE
Volume 364, Issue 6446, Pages eaav6202
出版商
American Association for the Advancement of Science (AAAS)
发表日期
2019-06-21
DOI
10.1126/science.aav6202
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genetic basis of ruminant headgear and rapid antler regeneration
- (2019) Yu Wang et al. SCIENCE
- CRISPR/Cas9-mediated MSTN disruption and heritable mutagenesis in goats causes increased body mass
- (2018) X. Wang et al. ANIMAL GENETICS
- ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
- (2018) Chao Zhang et al. BMC BIOINFORMATICS
- DiscoVista: Interpretable visualizations of gene tree discordance
- (2018) Erfan Sayyari et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Inferring Phylogenetic Networks Using PhyloNet
- (2018) Dingqiao Wen et al. SYSTEMATIC BIOLOGY
- Direct determination of diploid genome sequences
- (2017) Neil I. Weisenfeld et al. GENOME RESEARCH
- PAX9 regulates squamous cell differentiation and carcinogenesis in the oro-oesophageal epithelium
- (2017) Zhaohui Xiong et al. JOURNAL OF PATHOLOGY
- PhyloNetworks: A Package for Phylogenetic Networks
- (2017) Claudia Solís-Lemus et al. MOLECULAR BIOLOGY AND EVOLUTION
- Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
- (2017) Derek M Bickhart et al. NATURE GENETICS
- On the origin of modern humans: Asian perspectives
- (2017) Christopher J. Bae et al. SCIENCE
- Millions of Years Behind: Slow Adaptation of Ruminants to Grasslands
- (2017) Olja Toljagić et al. SYSTEMATIC BIOLOGY
- Draft genome of the milu (Elaphurus davidianus)
- (2017) Chenzhou Zhang et al. GigaScience
- Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
- (2017) Panayotis Vlastaridis et al. GigaScience
- Establishment and phenotypic analysis of an Mstn knockout rat
- (2016) Hao Gu et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Epithelial sodium channel (ENaC) family: Phylogeny, structure–function, tissue distribution, and associated inherited diseases
- (2016) Israel Hanukoglu et al. GENE
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
- (2016) Erfan Sayyari et al. MOLECULAR BIOLOGY AND EVOLUTION
- The gene tree delusion
- (2016) Mark S. Springer et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection
- (2016) Adriana García-Ruiz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Giraffe genome sequence reveals clues to its unique morphology and physiology
- (2016) Morris Agaba et al. Nature Communications
- Isozygous and selectable marker-free MSTN knockout cloned pigs generated by the combined use of CRISPR/Cas9 and Cre/LoxP
- (2016) Yanzhen Bi et al. Scientific Reports
- Systematic relationships of five newly sequenced cervid species
- (2016) Nicola S. Heckeberg et al. PeerJ
- Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues
- (2016) Ruidong Xiang et al. PeerJ
- Generation of biallelic knock-out sheep via gene-editing and somatic cell nuclear transfer
- (2016) Honghui Li et al. Scientific Reports
- ExaML version 3: a tool for phylogenomic analyses on supercomputers
- (2015) Alexey M. Kozlov et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- A genome survey sequencing of the Java mouse deer (Tragulus javanicus) adds new aspects to the evolution of lineage specific retrotransposons in Ruminantia (Cetartiodactyla)
- (2015) S. Gallus et al. GENE
- Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?
- (2015) Zhengting Zou et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ballgown bridges the gap between transcriptome assembly and expression analysis
- (2015) Alyssa C Frazee et al. NATURE BIOTECHNOLOGY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Detection and Polarization of Introgression in a Five-Taxon Phylogeny
- (2015) James B. Pease et al. SYSTEMATIC BIOLOGY
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Systematics and Evolution of the Miocene Three-Horned Palaeomerycid Ruminants (Mammalia, Cetartiodactyla)
- (2015) Israel M. Sánchez et al. PLoS One
- Old World Ruminant Morphophysiology, Life History, and Fossil Record: Exploring Key Innovations of a Diversification Sequence
- (2014) Marcus Clauss et al. ANNALES ZOOLOGICI FENNICI
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- (2014) Rei Kajitani et al. GENOME RESEARCH
- The genomic substrate for adaptive radiation in African cichlid fish
- (2014) David Brawand et al. NATURE
- Defining the role of common variation in the genomic and biological architecture of adult human height
- (2014) Andrew R Wood et al. NATURE GENETICS
- Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics
- (2014) Min Tang et al. NUCLEIC ACIDS RESEARCH
- Efficient Generation of Myostatin (MSTN) Biallelic Mutations in Cattle Using Zinc Finger Nucleases
- (2014) Junjie Luo et al. PLoS One
- The sheep genome illuminates biology of the rumen and lipid metabolism
- (2014) Y. Jiang et al. SCIENCE
- Statistical binning enables an accurate coalescent-based estimation of the avian tree
- (2014) S. Mirarab et al. SCIENCE
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- Camelid genomes reveal evolution and adaptation to desert environments
- (2014) Huiguang Wu et al. Nature Communications
- Phylogenetic analyses and improved resolution of the family Bovidae based on complete mitochondrial genomes
- (2013) Chengzhong Yang et al. BIOCHEMICAL SYSTEMATICS AND ECOLOGY
- A multi-calibrated mitochondrial phylogeny of extant Bovidae (Artiodactyla, Ruminantia) and the importance of the fossil record to systematics
- (2013) Faysal Bibi BMC EVOLUTIONARY BIOLOGY
- Serpins, Immunity and Autoimmunity: Old Molecules, New Functions
- (2013) Mariele Gatto et al. CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY
- BMP signaling controls muscle mass
- (2013) Roberta Sartori et al. NATURE GENETICS
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Fibroblast growth factor signaling in mammalian tooth development
- (2013) Chun-Ying Li et al. Odontology
- SOX9 Duplication Linked to Intersex in Deer
- (2013) Regina Kropatsch et al. PLoS One
- Are There Really Twice as Many Bovid Species as We Thought?
- (2013) Rasmus Heller et al. SYSTEMATIC BIOLOGY
- The tiger genome and comparative analysis with lion and snow leopard genomes
- (2013) Yun Sung Cho et al. Nature Communications
- Draft genome sequence of the Tibetan antelope
- (2013) Ri-Li Ge et al. Nature Communications
- Generation length for mammals
- (2013) Moreno Di Marco et al. Nature Conservation-Bulgaria
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- The bonobo genome compared with the chimpanzee and human genomes
- (2012) Kay Prüfer et al. NATURE
- Analyses of pig genomes provide insight into porcine demography and evolution
- (2012) Martien A. M. Groenen et al. NATURE
- The yak genome and adaptation to life at high altitude
- (2012) Qiang Qiu et al. NATURE GENETICS
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2012) S. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
- (2012) M. dos Reis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
- (2012) Daniel H. Huson et al. SYSTEMATIC BIOLOGY
- Mechanisms of Leukocyte Transendothelial Migration
- (2011) William A. Muller Annual Review of Pathology-Mechanisms of Disease
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Aldo-keto reductases AKR1C1, AKR1C2 and AKR1C3 may enhance progesterone metabolism in ovarian endometriosis
- (2011) N. Hevir et al. CHEMICO-BIOLOGICAL INTERACTIONS
- Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes
- (2011) Alexandre Hassanin et al. COMPTES RENDUS BIOLOGIES
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
- (2011) A. Hobolth et al. GENOME RESEARCH
- A new, early Puercan (earliest Paleocene) species of Purgatorius (Plesiadapiformes, Primates) from Saskatchewan, Canada
- (2011) Richard C. Fox et al. JOURNAL OF PALEONTOLOGY
- Overexpression of SERPIN B3 promotes epithelial proliferation and lung fibrosis in mice
- (2011) Francesca Lunardi et al. LABORATORY INVESTIGATION
- Testing for Ancient Admixture between Closely Related Populations
- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- Species-specific responses of Late Quaternary megafauna to climate and humans
- (2011) Eline D. Lorenzen et al. NATURE
- KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
- (2011) Chen Xie et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics
- (2011) Christopher M. Seabury et al. PLoS One
- Evolution of ruminant headgear: a review
- (2011) E. B. Davis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
- (2011) R. W. Meredith et al. SCIENCE
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
- (2010) Liang Liu et al. BMC EVOLUTIONARY BIOLOGY
- PHAST and RPHAST: phylogenetic analysis with space/time models
- (2010) M. J. Hubisz et al. BRIEFINGS IN BIOINFORMATICS
- Age-dependent chromosomal distribution of male-biased genes in Drosophila
- (2010) Y. E. Zhang et al. GENOME RESEARCH
- RUMINANT NUTRITION SYMPOSIUM: Molecular adaptation of ruminal epithelia to highly fermentable diets1
- (2010) G. B. Penner et al. JOURNAL OF ANIMAL SCIENCE
- Invited review: Ruminant ecology and evolution: Perspectives useful to ruminant livestock research and production
- (2010) T.J. Hackmann et al. JOURNAL OF DAIRY SCIENCE
- The genus Hispanomeryx (Mammalia, Ruminantia, Moschidae) and its bearing on musk deer phylogeny and systematics
- (2010) ISRAEL M. SÁNCHEZ et al. PALAEONTOLOGY
- Transcriptional regulation of bone formation by the osteoblast-specific transcription factor Osx
- (2010) Chi Zhang Journal of Orthopaedic Surgery and Research
- Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome
- (2010) Yong E. Zhang et al. PLOS BIOLOGY
- Genetics of Athletic Performance
- (2009) Elaine A. Ostrander et al. Annual Review of Genomics and Human Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Characterization of the bovine pregnancy-associated glycoprotein gene family – analysis of gene sequences, regulatory regions within the promoter and expression of selected genes
- (2009) Bhanu Telugu et al. BMC GENOMICS
- Pathogen Recognition and Inflammatory Signaling in Innate Immune Defenses
- (2009) T. H. Mogensen CLINICAL MICROBIOLOGY REVIEWS
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Bovidae (Mammalia) from the Lower Pliocene of Chad
- (2009) Denis Geraads et al. JOURNAL OF VERTEBRATE PALEONTOLOGY
- The sequence and de novo assembly of the giant panda genome
- (2009) Ruiqiang Li et al. NATURE
- Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics
- (2009) J. E. Decker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
- (2009) C. M. Wade et al. SCIENCE
- A whole-genome assembly of the domestic cow, Bos taurus
- (2009) Aleksey V Zimin et al. GENOME BIOLOGY
- Enamel Defects and Ameloblast-specific Expression inEnamKnock-out/lacZKnock-in Mice
- (2008) Jan C.-C. Hu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- New hippotragini (Bovidae, Mammalia) from the Late Miocene of Toros-Menalla (Chad)
- (2008) Denis Geraads et al. JOURNAL OF VERTEBRATE PALEONTOLOGY
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
- Regulation of bone development and maintenance by Runx2
- (2007) Toshihisa Komori Frontiers in Bioscience-Landmark
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