An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Using null models to infer microbial co-occurrence networks

(2017) Nora Connor et al.   PLoS One

Effect of Sewage and Industrial Effluents on Bacterial and Archaeal Communities of Creek Sediments in the Taihu Basin

(2017) Da Li et al.   Water

Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica

(2017) Hyunmin Koo et al.   Frontiers in Microbiology

Influences of anthropogenic land use on microbial community structure and functional potentials of stream benthic biofilms

(2017) Xiaodong Qu et al.   Scientific Reports

Microbial functional genes enriched in the Xiangjiang River sediments with heavy metal contamination

(2016) Shiqi Jie et al.   BMC MICROBIOLOGY

Comparative metagenome of a stream impacted by the urbanization phenomenon

(2016) Julliane Dutra Medeiros et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Impacts of multiple stressors on ecosystem function: Leaf decomposition in constructed urban wetlands

(2016) Teresa J. Mackintosh et al.   ENVIRONMENTAL POLLUTION

Bacterial community composition and structure in an Urban River impacted by different pollutant sources

(2016) A. Mark Ibekwe et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea

(2016) Markus V. Lindh et al.   Frontiers in Microbiology

Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton

(2016) Mathias Milici et al.   Frontiers in Microbiology

Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms

(2016) Jaejoon Jung et al.   Scientific Reports

Bacterial community composition of an urban river in the North West Province, South Africa, in relation to physico-chemical water quality

(2015) K. Jordaan et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

An integrated insight into the response of sedimentary microbial communities to heavy metal contamination

(2015) Huaqun Yin et al.   Scientific Reports

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment

(2015) Patrícia S. Costa et al.   PLoS One

Biogeography of the Sediment Bacterial Community Responds to a Nitrogen Pollution Gradient in the East China Sea

(2014) Jinbo Xiong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

The Pseudomonas community in metal-contaminated sediments as revealed by quantitative PCR: a link with metal bioavailability

(2014) Stéphanie Roosa et al.   RESEARCH IN MICROBIOLOGY

Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover

(2014) Christopher Staley et al.   Frontiers in Microbiology

Wastewater Treatment Effluent Reduces the Abundance and Diversity of Benthic Bacterial Communities in Urban and Suburban Rivers

(2013) Bradley Drury et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Using high-throughput sequencing to assess the impacts of treated and untreated wastewater discharge on prokaryotic communities in an urban river

(2013) Yaohui Bai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial diversity in a large, temperate, heavily modified river, as determined by pyrosequencing

(2013) GE Schultz Jr et al.   AQUATIC MICROBIAL ECOLOGY

Response of Planktonic and Benthic Microbial Community to Urban Pollution from Sewage Discharge in Jilin Reach of the Second Songhua River, China

(2013) Shanshan Lin et al.   CLEAN-Soil Air Water

Does environmental heterogeneity affect species co-occurrence in ecological guilds across stream macroinvertebrate metacommunities?

(2013) Jani Heino et al.   ECOGRAPHY

Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients

(2013) Melanie Y. Sun et al.   ENVIRONMENTAL MICROBIOLOGY

The importance of species sorting differs between habitat generalists and specialists in bacterial communities

(2013) Anna J. Székely et al.   FEMS MICROBIOLOGY ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river

(2013) Geneviève Bricheux et al.   MicrobiologyOpen

Beyond the genome: community-level analysis of the microbial world

(2012) Iratxe Zarraonaindia et al.   BIOLOGY & PHILOSOPHY

Bacterial communities are sensitive indicators of contaminant stress

(2012) Melanie Y. Sun et al.   MARINE POLLUTION BULLETIN

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Heavy metal pollution exerts reduction/adaptation in the diversity and enzyme expression profile of heterotrophic bacteria in Cochin estuary, India

(2011) Jiya Jose et al.   ENVIRONMENTAL POLLUTION

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Microbial pollution indicators and culturable heterotrophic bacteria in a Mediterranean area (Southern Adriatic Sea Italian coasts)

(2011) L. Stabili et al.   JOURNAL OF SEA RESEARCH

Characterization of the Active Bacterial Community Involved in Natural Attenuation Processes in Arsenic-Rich Creek Sediments

(2011) Odile Bruneel et al.   MICROBIAL ECOLOGY

Watershed Urbanization Alters the Composition and Function of Stream Bacterial Communities

(2011) Si-Yi Wang et al.   PLoS One

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

(2011) André M. Comeau et al.   PLoS One

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Peatlands as Filters for Polluted Mine Water?—A Case Study from an Uranium-Contaminated Karst System in South Africa—Part IV: Quantifying the Chemical Filter Component

(2011) Frank Winde   Water

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient

(2010) Heidi L Gough et al.   ISME Journal

Fractionation of heavy metals in shallow marine sediments from Jinzhou Bay, China

(2010) Shaofeng Wang et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of a metal resistant Pseudomonas sp. isolated from uranium mine for its potential in heavy metal (Ni2+, Co2+, Cu2+, and Cd2+) sequestration

(2009) Sangeeta Choudhary et al.   BIORESOURCE TECHNOLOGY

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens

(2009) Carla Risso et al.   BMC GENOMICS

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

Assessment of bacterial community structure in a long-term copper-polluted ex-vineyard soil

(2007) Elena Dell’Amico et al.   MICROBIOLOGICAL RESEARCH