An efficient three-dimensional rhizosphere modeling capability to study the effect of root system architecture on soil water and reactive transport

CRootBox: a structural–functional modelling framework for root systems

(2018) Andrea Schnepf et al.   ANNALS OF BOTANY

Effect of ion exchange on the rate of aerobic microbial oxidation of ammonium in hyporheic zone sediments

(2018) Ailan Yan et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain

(2017) Steven B. Yabusaki et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Open Sim Root : widening the scope and application of root architectural models

(2017) Johannes A. Postma et al.   NEW PHYTOLOGIST

Root type is not an important driver of mycorrhizal colonisation in Brachypodium distachyon

(2017) Suzanne Donn et al.   PEDOBIOLOGIA

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

(2017) Deepak Jaiswal et al.   Nature Climate Change

Biophysical rhizosphere processes affecting root water uptake

(2016) A. Carminati et al.   ANNALS OF BOTANY

Image-based modelling of nutrient movement in and around the rhizosphere

(2016) Keith R. Daly et al.   JOURNAL OF EXPERIMENTAL BOTANY

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

(2016) Larry M. York et al.   JOURNAL OF EXPERIMENTAL BOTANY

Diel plant water use and competitive soil cation exchange interact to enhance NH4 + and K+ availability in the rhizosphere

(2016) Javier F. Espeleta et al.   PLANT AND SOIL

Modelling the interactions between root system architecture, root functions and reactive transport processes in soil

(2016) Frédéric Gérard et al.   PLANT AND SOIL

A soil-plant-atmosphere continuum (SPAC) model for simulating tree transpiration with a soil multi-compartment solution

(2016) Omar García-Tejera et al.   PLANT AND SOIL

A user-friendly means to scale from the biochemistry of photosynthesis to whole crop canopies and production in time and space - development of Java WIMOVAC

(2016) Qingfeng Song et al.   PLANT CELL AND ENVIRONMENT

Modeling Soil Processes: Review, Key Challenges, and New Perspectives

(2016) H. Vereecken et al.   VADOSE ZONE JOURNAL

Brachypodium distachyonandSetaria viridis: Model Genetic Systems for the Grasses

(2015) Thomas P. Brutnell et al.   Annual Review of Plant Biology

Modeling the reactive ion dynamics in the rhizosphere of tree roots growing in acid soils. I. Rhizospheric distribution patterns and root uptake of Mb cations as affected by root-induced pH and Al dynamics

(2015) H. Nietfeld et al.   ECOLOGICAL MODELLING

Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles

(2015) Adrien C. Finzi et al.   GLOBAL CHANGE BIOLOGY

A physiological and biophysical model of coppice willow (Salixspp.) production yields for the contiguous USA in current and future climate scenarios

(2015) DAN WANG et al.   PLANT CELL AND ENVIRONMENT

Plants in silico : why, why now and what?-an integrative platform for plant systems biology research

(2015) Xin-Guang Zhu et al.   PLANT CELL AND ENVIRONMENT

Tree root systems competing for soil moisture in a 3D soil–plant model

(2014) Gabriele Manoli et al.   ADVANCES IN WATER RESOURCES

Impact of contrasted maize root traits at flowering on water stress tolerance – A simulation study

(2014) Daniel Leitner et al.   FIELD CROPS RESEARCH

Finite Element Model of Soil Water and Nutrient Transport with Root Uptake: Explicit Geometry and Unstructured Adaptive Meshing

(2014) Pierre-Henri Tournier et al.   TRANSPORT IN POROUS MEDIA

Introduction to aVirtual Special Issue: modeling the hidden half - the root of our problem

(2013) Roser Matamala et al.   NEW PHYTOLOGIST

Modelling root–soil interactions using three–dimensional models of root growth, architecture and function

(2013) Vanessa M. Dunbabin et al.   PLANT AND SOIL

Sagebrush carrying out hydraulic lift enhances surface soil nitrogen cycling and nitrogen uptake into inflorescences

(2013) Z. G. Cardon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling spatial and dynamic variation in growth, yield, and yield stability of the bioenergy crops Miscanthus × giganteus and Panicum virgatum across the conterminous United States

(2011) Fernando E. Miguez et al.   Global Change Biology Bioenergy

Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment

(2011) Steven B. Yabusaki et al.   JOURNAL OF CONTAMINANT HYDROLOGY

The algorithmic beauty of plant roots – an L-System model for dynamic root growth simulation

(2010) Daniel Leitner et al.   MATHEMATICAL AND COMPUTER MODELLING OF DYNAMICAL SYSTEMS

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

A dynamic root system growth model based on L-Systems

(2010) Daniel Leitner et al.   PLANT AND SOIL

Comparison of nutrient uptake between three‐dimensional simulation and an averaged root system model

(2010) D. Leitner et al.   PLANT BIOSYSTEMS

Kinetics of Uranium(VI) Desorption from Contaminated Sediments: Effect of Geochemical Conditions and Model Evaluation

(2009) Chongxuan Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The shoot and root growth of Brachypodium and its potential as a model for wheat and other cereal crops

(2009) Michelle Watt et al.   FUNCTIONAL PLANT BIOLOGY

A semimechanistic model predicting the growth and production of the bioenergy cropMiscanthus×giganteus:description, parameterization and validation

(2009) FERNANDO E. MIGUEZ et al.   Global Change Biology Bioenergy

Modeling compensated root water and nutrient uptake

(2008) Jiří Šimůnek et al.   ECOLOGICAL MODELLING

Brachypodium distachyon: making hay with a wild grass

(2008) Magdalena Opanowicz et al.   TRENDS IN PLANT SCIENCE

Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake

(2008) Mathieu Javaux et al.   VADOSE ZONE JOURNAL

A two-dimensional simulation model of phosphorus uptake including crop growth and P-response

(2007) Alain Mollier et al.   ECOLOGICAL MODELLING