Systems structural biology measurements by in vivo cross-linking with mass spectrometry
出版年份 2019 全文链接
标题
Systems structural biology measurements by in vivo cross-linking with mass spectrometry
作者
关键词
-
出版物
Nature Protocols
Volume 14, Issue 8, Pages 2318-2343
出版商
Springer Science and Business Media LLC
发表日期
2019-07-04
DOI
10.1038/s41596-019-0181-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification
- (2018) Jared P. Mohr et al. ANALYTICAL CHEMISTRY
- Impact of Chemical Cross-Linking on Protein Structure and Function
- (2018) Daniel Rozbeský et al. ANALYTICAL CHEMISTRY
- Histone interaction landscapes visualized by crosslinking mass spectrometry in intact cell nuclei
- (2018) Domenico Fasci et al. MOLECULAR & CELLULAR PROTEOMICS
- Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data
- (2018) Zsuzsanna Orbán-Németh et al. Nature Protocols
- Cryo-EM structure of human mitochondrial trifunctional protein
- (2018) Kai Liang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue
- (2018) Juan D. Chavez et al. Cell Systems
- Increased Sensitivity with Automated Validation of XL-MS Cleavable Peptide Crosslinks
- (2018) Andrew Keller et al. BIOINFORMATICS
- Tools for 3D Interactome Visualization
- (2018) Andrew Keller et al. JOURNAL OF PROTEOME RESEARCH
- Efficient and robust proteome-wide approaches for cross-linking mass spectrometry
- (2018) Oleg Klykov et al. Nature Protocols
- A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein–protein interactions
- (2018) Claudio Iacobucci et al. Nature Protocols
- The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes
- (2017) Fan Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry
- (2017) Devin K. Schweppe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Insights in luteovirid structural biology guided by chemical cross-linking and high resolution mass spectrometry
- (2017) Mariko M. Alexander et al. VIRUS RESEARCH
- Protein interaction networks at the host–microbe interface inDiaphorina citri, the insect vector of the citrus greening pathogen
- (2017) J. S. Ramsey et al. Royal Society Open Science
- Divide and conquer: cleavable cross-linkers to study protein conformation and protein–protein interactions
- (2016) Andrea Sinz ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data
- (2016) Devin K. Schweppe et al. BIOINFORMATICS
- Modeling Protein Excited-state Structures from “Over-length” Chemical Cross-links
- (2016) Yue-He Ding et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers
- (2016) Xuefei Zhong et al. JOURNAL OF PROTEOME RESEARCH
- Probing Protein 3D Structures and Conformational Changes Using Electrochemistry-Assisted Isotope Labeling Cross-Linking Mass Spectrometry
- (2016) Qiuling Zheng et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry
- (2016) Juan D. Chavez et al. PLoS One
- Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines
- (2016) Alexander Leitner et al. TRENDS IN BIOCHEMICAL SCIENCES
- In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075
- (2016) Xia Wu et al. Nature Communications
- Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states
- (2016) Dan Tan et al. eLife
- Host-Microbe Protein Interactions during Bacterial Infection
- (2015) Devin K. Schweppe et al. CHEMISTRY & BIOLOGY
- Visualization of Host-Polerovirus Interaction Topologies Using Protein Interaction Reporter Technology
- (2015) Stacy L. DeBlasio et al. JOURNAL OF VIROLOGY
- XL-MS: Protein cross-linking coupled with mass spectrometry
- (2015) Andrew N. Holding METHODS
- Dynamic Proteome Response ofPseudomonas aeruginosato Tobramycin Antibiotic Treatment
- (2015) Xia Wu et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
- (2015) Fan Liu et al. NATURE METHODS
- Probing the Protein Interaction Network of Pseudomonas aeruginosa Cells by Chemical Cross-Linking Mass Spectrometry
- (2015) Arti T. Navare et al. STRUCTURE
- Quantitative interactome analysis reveals a chemoresistant edgotype
- (2015) Juan D. Chavez et al. Nature Communications
- Cross-Linking Electrochemical Mass Spectrometry for Probing Protein Three-Dimensional Structures
- (2014) Qiuling Zheng et al. ANALYTICAL CHEMISTRY
- A Newin VivoCross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells
- (2014) Robyn M. Kaake et al. MOLECULAR & CELLULAR PROTEOMICS
- Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
- (2014) Nils A Kulak et al. NATURE METHODS
- AB5075, a Highly Virulent Isolate of Acinetobacter baumannii, as a Model Strain for the Evaluation of Pathogenesis and Antimicrobial Treatments
- (2014) A. C. Jacobs et al. mBio
- XLink-DB: Database and Software Tools for Storing and Visualizing Protein Interaction Topology Data
- (2013) Chunxiang Zheng et al. JOURNAL OF PROTEOME RESEARCH
- In Vivo Protein Interaction Network Identified with a Novel Real-Time Cross-Linked Peptide Identification Strategy
- (2013) Chad R. Weisbrod et al. JOURNAL OF PROTEOME RESEARCH
- Protein Interactions, Post-translational Modifications and Topologies in Human Cells
- (2013) Juan D. Chavez et al. MOLECULAR & CELLULAR PROTEOMICS
- Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification
- (2013) Michael J. Trnka et al. MOLECULAR & CELLULAR PROTEOMICS
- Cross-linking Measurements of the Potato leafroll virus Reveal Protein Interaction Topologies Required for Virion Stability, Aphid Transmission, and Virus–Plant Interactions
- (2012) Juan D. Chavez et al. JOURNAL OF PROTEOME RESEARCH
- Comet: An open-source MS/MS sequence database search tool
- (2012) Jimmy K. Eng et al. PROTEOMICS
- Chemical cross-linkers for protein structure studies by mass spectrometry
- (2012) David Paramelle et al. PROTEOMICS
- In Vivo Application of Photocleavable Protein Interaction Reporter Technology
- (2011) Li Yang et al. JOURNAL OF PROTEOME RESEARCH
- iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
- (2011) David Shteynberg et al. MOLECULAR & CELLULAR PROTEOMICS
- Cross-linking Measurements ofIn VivoProtein Complex Topologies
- (2011) Chunxiang Zheng et al. MOLECULAR & CELLULAR PROTEOMICS
- Chemical Cross-Linking and Mass Spectrometry As a Low-Resolution Protein Structure Determination Technique
- (2010) Pragya Singh et al. ANALYTICAL CHEMISTRY
- The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
- (2010) Juri Rappsilber JOURNAL OF STRUCTURAL BIOLOGY
- Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein Complexes
- (2010) Athit Kao et al. MOLECULAR & CELLULAR PROTEOMICS
- Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics
- (2010) Alexander Leitner et al. MOLECULAR & CELLULAR PROTEOMICS
- An Isotopically Coded CID-cleavable Biotinylated Cross-linker for Structural Proteomics
- (2010) Evgeniy V. Petrotchenko et al. MOLECULAR & CELLULAR PROTEOMICS
- A new cross-linking strategy: protein interaction reporter (PIR) technology for protein–protein interaction studies
- (2010) Xiaoting Tang et al. Molecular BioSystems
- A universal matrix-assisted laser desorption/ionization cleavable cross-linker for protein structure analysis
- (2010) Mathias Q. Müller et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- In Vivo Identification of the Outer Membrane Protein OmcA−MtrC Interaction Network inShewanella oneidensisMR-1 Cells Using Novel Hydrophobic Chemical Cross-Linkers
- (2008) Haizhen Zhang et al. JOURNAL OF PROTEOME RESEARCH
- BiPS, a Photocleavable, Isotopically Coded, Fluorescent Cross-linker for Structural Proteomics
- (2008) Evgeniy V. Petrotchenko et al. MOLECULAR & CELLULAR PROTEOMICS
- Identification of cross-linked peptides from large sequence databases
- (2008) Oliver Rinner et al. NATURE METHODS
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