Impact of reduced-representation sequencing protocols on detecting population structure in a threatened marsupial

Minor allele frequency thresholds strongly affect population structure inference with genomic datasets

(2019) Ethan Linck et al.   Molecular Ecology Resources

Long-term genetic consequences of mammal reintroductions into an Australian conservation reserve

(2018) Lauren C. White et al.   BIOLOGICAL CONSERVATION

Substantial differences in bias between single-digest and double-digest RAD-seq libraries: A case study

(2017) Sarah P. Flanagan et al.   Molecular Ecology Resources

Recent advances in the study of fine-scale population structure in humans

(2016) John Novembre et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

(2016) Aaron B. A. Shafer et al.   Methods in Ecology and Evolution

How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards

(2015) Jeffrey W. Streicher et al.   SYSTEMATIC BIOLOGY

Captive management and the maintenance of genetic diversity in a vulnerable marsupial, the greater bilby

(2015) Emily J. Miller et al.   AUSTRALIAN MAMMALOGY

Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol

(2014) Jeffrey M. DaCosta et al.   PLoS One

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Development of DArT Marker Platforms and Genetic Diversity Assessment of the U.S. Collection of the New Oilseed Crop Lesquerella and Related Species

(2013) Von Mark V. Cruz et al.   PLoS One

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

Inferring Phylogenies from RAD Sequence Data

(2012) Benjamin E. R. Rubin et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Genetic diversity and population structure in the endangered giant otter, Pteronura brasiliensis

(2011) R. S. A. Pickles et al.   CONSERVATION GENETICS

The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

(2010) S T Kalinowski   HEREDITY

Black Bear Population Genetics in California: Signatures of Population Structure, Competitive Release, and Historical Translocation

(2009) Sarah K. Brown et al.   JOURNAL OF MAMMALOGY