Genome Sequencing of the Japanese Eel (Anguilla japonica) for Comparative Genomic Studies on tbx4 and a tbx4 Gene Cluster in Teleost Fishes

Adipose fin development and its relation to the evolutionary origins of median fins

(2019) Thomas A. Stewart et al.   Scientific Reports

Ontogeny of the catfish pectoral-fin spine (Teleostei: Siluriformes)

(2019) Kole M. Kubicek et al.   JOURNAL OF MORPHOLOGY

Mechanical properties of the venomous spines of Pterois volitans and morphology among lionfish species

(2019) Katherine A. Galloway et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Divergence, evolution and adaptation in ray-finned fish genomes

(2019) Chao Bian et al.   Science China-Life Sciences

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

(2018) Kris A. Christensen et al.   PLoS One

Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes

(2018) Laura M Jackson et al.   SYSTEMATIC BIOLOGY

Genetic and Morphological Analyses Demonstrate That Schizolecis guntheri (Siluriformes: Loricariidae) Is Likely to Be a Species Complex

(2018) Camila S. Souza et al.   Frontiers in Genetics

Genetic parameters and quantitative trait loci analysis associated with body size and timing at metamorphosis into glass eels in captive-bred Japanese eels (Anguilla japonica)

(2018) Kazuharu Nomura et al.   PLoS One

Whole-Genome Sequencing of Chinese Yellow Catfish Provides a Valuable Genetic Resource for High-Throughput Identification of Toxin Genes

(2018) Shiyong Zhang et al.   Toxins

A novel enhancer near the Pitx1 gene influences development and evolution of pelvic appendages in vertebrates

(2018) Abbey C Thompson et al.   eLife

From Marine Venoms to Drugs: Efficiently Supported by a Combination of Transcriptomics and Proteomics

(2017) Bing Xie et al.   Marine Drugs

Draft genome of the Northern snakehead, Channa argus

(2017) Jian Xu et al.   GigaScience

Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius

(2017) Kai Liu et al.   GigaScience

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

(2016) Junxing Yang et al.   BMC BIOLOGY

Progressive Loss of Function in a Limb Enhancer during Snake Evolution

(2016) Evgeny Z. Kvon et al.   CELL

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The seahorse genome and the evolution of its specialized morphology

(2016) Qiang Lin et al.   NATURE

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Genetic basis of hindlimb loss in a naturally occurring vertebrate model

(2016) Emily K. Don et al.   Biology Open

Draft genome of the Chinese mitten crab, Eriocheir sinensis

(2016) Linsheng Song et al.   GigaScience

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales

(2015) Mario dos Reis et al.   CURRENT BIOLOGY

Shared Enhancer Activity in the Limbs and Phallus and Functional Divergence of a Limb-Genital cis-Regulatory Element in Snakes

(2015) Carlos R. Infante et al.   DEVELOPMENTAL CELL

Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes

(2015) Ricardo Betancur-R et al.   ECOLOGY LETTERS

Development of five digits is controlled by a bipartite long-range cis-regulator

(2014) L. A. Lettice et al.   DEVELOPMENT

New species of miniature fish from Marajó Island, Pará, Brazil, with comments on its relationships (Characiformes: Characidae)

(2014) Manoela M. F. Marinho et al.   Neotropical Ichthyology

Unusual anal fin in a Devonian jawless vertebrate reveals complex origins of paired appendages

(2013) R. S. Sansom et al.   Biology Letters

Tbx2 Terminates Shh/Fgf Signaling in the Developing Mouse Limb Bud by Direct Repression of Gremlin1

(2013) Henner F. Farin et al.   PLoS Genetics

An antiarch placoderm shows that pelvic girdles arose at the root of jawed vertebrates

(2012) M. Zhu et al.   Biology Letters

Pitx1 broadly associates with limb enhancers and is enriched on hindlimb cis-regulatory elements

(2012) Carlos R. Infante et al.   DEVELOPMENTAL BIOLOGY

Opposing Functions of the ETS Factor Family Define Shh Spatial Expression in Limb Buds and Underlie Polydactyly

(2012) Laura A. Lettice et al.   DEVELOPMENTAL CELL

The evolutionary history of the development of the pelvic fin/hindlimb

(2012) Emily K. Don et al.   JOURNAL OF ANATOMY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

(2011) L. W. Parfrey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Pelvic fins in teleosts: structure, function and evolution

(2010) Y. Yamanoue et al.   JOURNAL OF FISH BIOLOGY

Evolutionary Origin and Phylogeny of the Modern Holocephalans (Chondrichthyes: Chimaeriformes): A Mitogenomic Perspective

(2010) J. G. Inoue et al.   MOLECULAR BIOLOGY AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Dual hindlimb control elements in the Tbx4 gene and region-specific control of bone size in vertebrate limbs

(2008) D. B. Menke et al.   DEVELOPMENT

Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs

(2008) Amy C. Horton et al.   DEVELOPMENT GENES AND EVOLUTION

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY