Identifying the growth associating genes of Nannochloropsis oceanica by bulked mutant analysis (BMA) and RNA sequencing (BMR-seq)

A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis

(2019) Xiaobo Li et al.   NATURE GENETICS

Unrestrained markerless trait stacking inNannochloropsis gaditanathrough combined genome editing and marker recycling technologies

(2018) John Verruto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring the chemodiversity of tropical microalgae for the discovery of natural antifouling compounds

(2018) Damien Réveillon et al.   JOURNAL OF APPLIED PHYCOLOGY

Structural Variation Analysis of Mutated Nannochloropsis oceanica Caused by Zeocin Through Genome Re-Sequencing

(2018) Genmei Lin et al.   Journal of Ocean University of China

Building a multipurpose insertional mutant library for forward and reverse genetics in Chlamydomonas

(2017) Xi Cheng et al.   Plant Methods

Efficient targeted DNA editing and replacement inChlamydomonas reinhardtiiusing Cpf1 ribonucleoproteins and single-stranded DNA

(2017) Aron Ferenczi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Verification of mutagen function of Zeocin in Nannochloropsis oceanica through transcriptome analysis

(2017) Genmei Lin et al.   Journal of Ocean University of China

An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii

(2016) Xiaobo Li et al.   PLANT CELL

Genome editing of model oleaginous microalgaeNannochloropsisspp. by CRISPR/Cas9

(2016) Qintao Wang et al.   PLANT JOURNAL

DNA-free two-gene knockout in Chlamydomonas reinhardtii via CRISPR-Cas9 ribonucleoproteins

(2016) Kwangryul Baek et al.   Scientific Reports

Microalgae as a new source of bioactive compounds in food supplements

(2016) Bruna da Silva Vaz et al.   Current Opinion in Food Science

Extreme-phenotype genome-wide association study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel

(2015) Jinliang Yang et al.   PLANT JOURNAL

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie

(2014) Eleni Giannoulatou et al.   BMC BIOINFORMATICS

High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA

(2014) R. Zhang et al.   PLANT CELL

The Hierarchy of the 3D Genome

(2013) Johan H. Gibcus et al.   MOLECULAR CELL

MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined withde novoassembly of gap regions identifies the rice blast resistance genePii

(2013) Hiroki Takagi et al.   NEW PHYTOLOGIST

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Enhanced Lipid Productivity and Photosynthesis Efficiency in a Desmodesmus sp. Mutant Induced by Heavy Carbon Ions

(2013) Guangrong Hu et al.   PLoS One

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice

(2013) Rym Fekih et al.   PLoS One

Characterization of microalga Nannochloropsis sp. mutants for improved production of biofuels

(2012) Kandiah Anandarajah et al.   APPLIED ENERGY

Isolation and partial characterization of mutants with elevated lipid content in Chlorella sorokiniana and Scenedesmus obliquus

(2012) Hélène Vigeolas et al.   JOURNAL OF BIOTECHNOLOGY

Hi–C: A comprehensive technique to capture the conformation of genomes

(2012) Jon-Matthew Belton et al.   METHODS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)

(2012) Sanzhen Liu et al.   PLoS One

Effects of acrylamide exposure on serum hormones, gene expression, cell proliferation, and histopathology in male reproductive tissues of Fischer 344 rats

(2012) L. Camacho et al.   TOXICOLOGY LETTERS

Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779

(2012) Astrid Vieler et al.   PLoS Genetics

Chromatin interaction networks and higher order architectures of eukaryotic genomes

(2011) Kuljeet Singh Sandhu et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

NUCLEAR MONOPLOIDY AND ASEXUAL PROPAGATION OF NANNOCHLOROPSIS OCEANICA (EUSTIGMATOPHYCEAE) AS REVEALED BY ITS GENOME SEQUENCE1

(2011) Kehou Pan et al.   JOURNAL OF PHYCOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Life-cycle analysis on biodiesel production from microalgae: Water footprint and nutrients balance

(2010) Jia Yang et al.   BIORESOURCE TECHNOLOGY

Golgi Calcium Pump Secretory Pathway Calcium ATPase 1 (SPCA1) Is a Key Regulator of Insulin-like Growth Factor Receptor (IGF1R) Processing in the Basal-like Breast Cancer Cell Line MDA-MB-231

(2010) Desma M. Grice et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Active and passive mechanisms of helicases

(2010) Maria Manosas et al.   NUCLEIC ACIDS RESEARCH

Repeat subtraction-mediated sequence capture from a complex genome

(2010) Yan Fu et al.   PLANT JOURNAL

An Outlook on Microalgal Biofuels

(2010) R. H. Wijffels et al.   SCIENCE

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A biofuel strategy for Ireland with an emphasis on production of biomethane and minimization of land-take

(2009) Anoop Singh et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS