标题
Patterns of protist diversity associated with raw sewage in New York City
作者
关键词
-
出版物
ISME Journal
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-07-09
DOI
10.1038/s41396-019-0467-z
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters
- (2017) Vincent Hervé et al. ISME Journal
- An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads
- (2017) Julia M. Maritz et al. MICROBIAL ECOLOGY
- Gut Protozoa: Friends or Foes of the Human Gut Microbiota?
- (2017) Magali Chabé et al. TRENDS IN PARASITOLOGY
- Prevalence and genetic diversity of Blastocystis in family units living in the United States
- (2016) Pauline D. Scanlan et al. INFECTION GENETICS AND EVOLUTION
- Local diversity of heathland Cercozoa explored by in-depth sequencing
- (2016) Christoffer Bugge Harder et al. ISME Journal
- Protistan community analysis: key findings of a large-scale molecular sampling
- (2016) Lars Grossmann et al. ISME Journal
- Dientamoeba fragilis, One of the Neglected Intestinal Protozoa
- (2016) Lynne S. Garcia JOURNAL OF CLINICAL MICROBIOLOGY
- Evaluation of five commercial methods for the extraction and purification of DNA from human faecal samples for downstream molecular detection of the enteric protozoan parasites Cryptosporidium spp., Giardia duodenalis , and Entamoeba spp
- (2016) Silvia Paulos et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Fungi in the healthy human gastrointestinal tract
- (2016) Heather E. Hallen-Adams et al. Virulence
- Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
- (2016) Yue Jiang et al. Microbiome
- Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City
- (2016) Holly M. Bik et al. mSphere
- Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment
- (2016) Tiffany Hsu et al. mSystems
- High taxonomic variability despite stable functional structure across microbial communities
- (2016) Stilianos Louca et al. Nature Ecology & Evolution
- Urban stress is associated with variation in microbial species composition—but not richness—in Manhattan
- (2015) Aspen T Reese et al. ISME Journal
- The activated sludge ecosystem contains a core community of abundant organisms
- (2015) Aaron M Saunders et al. ISME Journal
- Isolation of Vermamoeba vermiformis and associated bacteria in hospital water
- (2015) Isabelle Pagnier et al. MICROBIAL PATHOGENESIS
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2015) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water
- (2015) Asja Korajkic et al. WATER RESEARCH
- Sewage Reflects the Microbiomes of Human Populations
- (2015) Ryan J. Newton et al. mBio
- Sparse and Compositionally Robust Inference of Microbial Ecological Networks
- (2015) Zachary D. Kurtz et al. PLoS Computational Biology
- Compact graphical representation of phylogenetic data and metadata with GraPhlAn
- (2015) Francesco Asnicar et al. PeerJ
- Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics
- (2015) Ebrahim Afshinnekoo et al. Cell Systems
- Indoor-Air Microbiome in an Urban Subway Network: Diversity and Dynamics
- (2014) Marcus H. Y. Leung et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- The Earth Microbiome project: successes and aspirations
- (2014) Jack A Gilbert et al. BMC BIOLOGY
- The microbial eukaryoteBlastocystisis a prevalent and diverse member of the healthy human gut microbiota
- (2014) Pauline D. Scanlan et al. FEMS MICROBIOLOGY ECOLOGY
- A single genus in the gut microbiome reflects host preference and specificity
- (2014) A Murat Eren et al. ISME Journal
- Detection of Zoonotic Pathogens and Characterization of Novel Viruses Carried by Commensal Rattus norvegicus in New York City
- (2014) C. Firth et al. mBio
- Population dynamics and ecology of Arcobacter in sewage
- (2014) Jenny C. Fisher et al. Frontiers in Microbiology
- Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
- (2014) Laura Wegener Parfrey et al. Frontiers in Microbiology
- Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales
- (2013) Orin C. Shanks et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Tracking human sewage microbiome in a municipal wastewater treatment plant
- (2013) Lin Cai et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Sewage reflects the distribution of human faecalLachnospiraceae
- (2013) Sandra L. McLellan et al. ENVIRONMENTAL MICROBIOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks
- (2013) Krista L. McGuire et al. PLoS One
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure
- (2012) J. L. VandeWalle et al. ENVIRONMENTAL MICROBIOLOGY
- Phytoplankton chytridiomycosis: community structure and infectivity of fungal parasites in aquatic ecosystems
- (2012) Serena Rasconi et al. ENVIRONMENTAL MICROBIOLOGY
- Comparative genome analysis of two Cryptosporidium parvum isolates with different host range
- (2012) Giovanni Widmer et al. INFECTION GENETICS AND EVOLUTION
- Global biogeography of highly diverse protistan communities in soil
- (2012) Scott T Bates et al. ISME Journal
- Diagnosis of Tritrichomonas foetus-infected bulls, an ultimate approach to eradicate bovine trichomoniasis in US cattle?
- (2012) C. Yao JOURNAL OF MEDICAL MICROBIOLOGY
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- Distribution of Legionella pneumophila bacteria and Naegleria and Hartmannella amoebae in thermal saline baths used in balneotherapy
- (2012) Elżbieta Żbikowska et al. PARASITOLOGY RESEARCH
- Globally diverse Toxoplasma gondii isolates comprise six major clades originating from a small number of distinct ancestral lineages
- (2012) C. Su et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
- (2012) Sahar Abubucker et al. PLoS Computational Biology
- Bacterial community assembly based on functional genes rather than species
- (2011) C. Burke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tritrichomonas foetus isolates from cats and cattle show minor genetic differences in unrelated loci ITS-2 and EF-1α
- (2011) Karin Reinmann et al. VETERINARY PARASITOLOGY
- Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions
- (2011) Laura Wegener Parfrey et al. Frontiers in Microbiology
- Metagenomic biomarker discovery and explanation
- (2011) Nicola Segata et al. GENOME BIOLOGY
- Identification of Ciliate Grazers of Autotrophic Bacteria in Ammonia-Oxidizing Activated Sludge by RNA Stable Isotope Probing
- (2010) A. M. Moreno et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Protozoa in wastewater treatment processes: A minireview
- (2010) P. Madoni ITALIAN JOURNAL OF ZOOLOGY
- Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
- (2010) THORSTEN STOECK et al. MOLECULAR ECOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Current Views on the Clinical Relevance of Blastocystis spp.
- (2010) Kevin S. W. Tan et al. Current Infectious Disease Reports
- Centrality measures and the importance of generalist species in pollination networks
- (2009) Ana M. Martín González et al. Ecological Complexity
- Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent
- (2009) S. L. McLellan et al. ENVIRONMENTAL MICROBIOLOGY
- Molecular Characterization of the Trichomonas gallinae Morphologic Complex in the United States
- (2009) Richard W. Gerhold et al. JOURNAL OF PARASITOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started