The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database

Genomewide landscape of gene–metabolome associations in Escherichia coli

(2017) Tobias Fuhrer et al.   Molecular Systems Biology

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology

(2015) Peter D. Karp et al.   BRIEFINGS IN BIOINFORMATICS

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2015) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Subpathway Analysis based on Signaling-Pathway Impact Analysis of Signaling Pathway

(2015) Xianbin Li et al.   PLoS One

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure

(2013) Paulo Vieira Milreu et al.   BIOINFORMATICS

Along signal paths: an empirical gene set approach exploiting pathway topology

(2012) Paolo Martini et al.   NUCLEIC ACIDS RESEARCH

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

(2012) Vicente Acuña et al.   THEORETICAL COMPUTER SCIENCE

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS