miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer
出版年份 2019 全文链接
标题
miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer
作者
关键词
miRNA functional analysis, miRNA target prediction, Functional enrichment, Mature miRNA, TCGA, TCPA, Pancreatic cancer
出版物
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-07-16
DOI
10.1186/s12859-019-2974-3
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Plasma Micro-RNA Alterations Appear Late in Pancreatic Cancer
- (2018) Oskar Franklin et al. ANNALS OF SURGERY
- A fine balancing act: A delicate kinase-phosphatase equilibrium that protects against chromosomal instability and cancer
- (2018) Marilia Henriques Cordeiro et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- RBiomirGS: an all-in-one miRNA gene set analysis solution featuring target mRNA mapping and expression profile integration
- (2018) Jing Zhang et al. PeerJ
- MicroRNA expression patterns and target prediction in multiple myeloma development and malignancy
- (2017) Ivyna Pau Ni Bong et al. Genes & Genomics
- Plasma miRNAs Effectively Distinguish Patients With Pancreatic Cancer From Controls
- (2016) Jianwei Xu et al. ANNALS OF SURGERY
- Multi-omics enrichment analysis using the GeneTrail2 web service
- (2016) Daniel Stöckel et al. BIOINFORMATICS
- PROX1 and β-catenin are prognostic markers in pancreatic ductal adenocarcinoma
- (2016) Kapo Saukkonen et al. BMC CANCER
- microRNA target prediction programs predict many false positives
- (2016) Natalia Pinzón et al. GENOME RESEARCH
- Plasma miR-22-3p, miR-642b-3p and miR-885-5p as diagnostic biomarkers for pancreatic cancer
- (2016) Neveen Abd El Moneim Hussein et al. JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY
- miEAA: microRNA enrichment analysis and annotation
- (2016) Christina Backes et al. NUCLEIC ACIDS RESEARCH
- Skp1: Implications in cancer and SCF-oriented anti-cancer drug discovery
- (2016) Muzammal Hussain et al. PHARMACOLOGICAL RESEARCH
- Biostatistics series module 6: Correlation and linear regression
- (2016) Avijit Hazra et al. INDIAN JOURNAL OF DERMATOLOGY
- MiRComb: An R Package to Analyse miRNA-mRNA Interactions. Examples across Five Digestive Cancers
- (2016) Maria Vila-Casadesús et al. PLoS One
- Validated MicroRNA Target Databases: An Evaluation
- (2015) Yun Ji Diana Lee et al. DRUG DEVELOPMENT RESEARCH
- DIANA-miRPath v3.0: deciphering microRNA function with experimental support
- (2015) Ioannis S. Vlachos et al. NUCLEIC ACIDS RESEARCH
- Predicting effective microRNA target sites in mammalian mRNAs
- (2015) Vikram Agarwal et al. eLife
- Bioinformatic Interrogation of 5p-arm and 3p-arm Specific miRNA Expression Using TCGA Datasets
- (2015) Wei-Ting Kuo et al. Journal of Clinical Medicine
- The Split-Apply-Combine Strategy for Data Analysis
- (2015) Hadley Wickham Journal of Statistical Software
- cytoHubba: identifying hub objects and sub-networks from complex interactome
- (2014) Chia-Hao Chin et al. BMC Systems Biology
- The complexity of miRNA-mediated repression
- (2014) A Wilczynska et al. CELL DEATH AND DIFFERENTIATION
- MicroRNA Biomarkers in Whole Blood for Detection of Pancreatic Cancer
- (2014) Nicolai A. Schultz et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer
- (2014) Wenyu Zhang et al. Journal of Translational Medicine
- DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions
- (2014) Ioannis S. Vlachos et al. NUCLEIC ACIDS RESEARCH
- The multiMiR R package and database: integration of microRNA–target interactions along with their disease and drug associations
- (2014) Yuanbin Ru et al. NUCLEIC ACIDS RESEARCH
- STRING v10: protein–protein interaction networks, integrated over the tree of life
- (2014) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Mechanisms of miRNA-Mediated Gene Regulation from Common Downregulation to mRNA-Specific Upregulation
- (2014) Ayla Valinezhad Orang et al. International Journal of Genomics
- Novel blood-based microRNA biomarker panel for early diagnosis of pancreatic cancer
- (2014) Ganepola AP Ganepola World Journal of Gastrointestinal Oncology
- TCPA: a resource for cancer functional proteomics data
- (2013) Jun Li et al. NATURE METHODS
- A model based criterion for gene expression calls using RNA-seq data
- (2013) Günter P. Wagner et al. THEORY IN BIOSCIENCES
- MicroRNAs
- (2013) M. Bhaskaran et al. VETERINARY PATHOLOGY
- Functional microRNA targets in protein coding sequences
- (2012) Martin Reczko et al. BIOINFORMATICS
- Identifying miRNAs, targets and functions
- (2012) B. Liu et al. BRIEFINGS IN BIOINFORMATICS
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Role of Epidermal Growth Factor Receptor Expression on Patient Survival in Pancreatic Cancer: A Meta-Analysis
- (2012) Guopei Luo et al. PANCREATOLOGY
- RNA sequencing reveals two major classes of gene expression levels in metazoan cells
- (2011) D. Hebenstreit et al. Molecular Systems Biology
- TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs
- (2010) Ming Lu et al. BMC BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- When microRNAs activate translation
- (2008) Nicole Rusk NATURE METHODS
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