TelomereHunter – in silico estimation of telomere content and composition from cancer genomes

Telomere sequence content can be used to determine ALT activity in tumours

(2018) Michael Lee et al.   NUCLEIC ACIDS RESEARCH

Integrative genomic and transcriptomic analysis of leiomyosarcoma

(2018) Priya Chudasama et al.   Nature Communications

Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data

(2018) James H. R. Farmery et al.   Scientific Reports

Comparative analysis of whole genome sequencing-based telomere length measurement techniques

(2017) Michael Lee et al.   METHODS

Systematic analysis of telomere length and somatic alterations in 31 cancer types

(2017) Floris P Barthel et al.   NATURE GENETICS

Recurrent MET fusion genes represent a drug target in pediatric glioblastoma

(2016)   NATURE MEDICINE

Role of Telomeres and Telomerase in Aging and Cancer

(2016) J. W. Shay   Cancer Discovery

Computel: Computation of Mean Telomere Length from Whole-Genome Next-Generation Sequencing Data

(2015) Lilit Nersisyan et al.   PLoS One

Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

(2014) Volker Hovestadt et al.   NATURE

Estimating telomere length from whole genome sequence data

(2014) Zhihao Ding et al.   NUCLEIC ACIDS RESEARCH

Telomere extension by telomerase and ALT generates variant repeats by mechanistically distinct processes

(2013) Michael Lee et al.   NUCLEIC ACIDS RESEARCH

Variant repeats are interspersed throughout the telomeres and recruit nuclear receptors in ALT cells

(2012) Dimitri Conomos et al.   JOURNAL OF CELL BIOLOGY

Dissecting the genomic complexity underlying medulloblastoma

(2012) David T. W. Jones et al.   NATURE

Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data

(2012) Matthew Parker et al.   GENOME BIOLOGY

Telomere length measurement—Caveats and a critical assessment of the available technologies and tools

(2011) Geraldine Aubert et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity

(2009) Jeremy D Henson et al.   NATURE BIOTECHNOLOGY

A quantitative real-time PCR method for absolute telomere length

(2008) Nathan J. O'Callaghan et al.   BIOTECHNIQUES