cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs

Resolving the full spectrum of human genome variation using Linked-Reads

(2019) Patrick Marks et al.   GENOME RESEARCH

Culture-independent analysis of liver abscess using nanopore sequencing

(2018) Liang Gong et al.   PLoS One

Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity

(2018) Anton Bankevich et al.   Cell Systems

Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics

(2018) David C. Danko et al.   GENOME RESEARCH

High-quality genome sequences of uncultured microbes by assembly of read clouds

(2018) Alex Bishara et al.   NATURE BIOTECHNOLOGY

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Direct determination of diploid genome sequences

(2017) Neil I. Weisenfeld et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Algorithms and Complexity Results for Genome Mapping Problems

(2017) Ashok Rajaraman et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Comparison of ten different DNA extraction procedures with respect to their suitability for environmental samples

(2017) Ramona Kuhn et al.   JOURNAL OF MICROBIOLOGICAL METHODS

In Situ Field Sequencing and Life Detection in Remote (79°26′N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities

(2017) J. Goordial et al.   Frontiers in Microbiology

Genome assembly from synthetic long read clouds

(2016) Volodymyr Kuleshov et al.   BIOINFORMATICS

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

(2016) Grace X Y Zheng et al.   NATURE BIOTECHNOLOGY

TruSPAdes: barcode assembly of TruSeq synthetic long reads

(2016) Anton Bankevich et al.   NATURE METHODS

An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples

(2016) Satyabrata Bag et al.   Scientific Reports

MetaQUAST: evaluation of metagenome assemblies

(2015) Alla Mikheenko et al.   BIOINFORMATICS

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

(2015) Itai Sharon et al.   GENOME RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

(2014) Andrew Adey et al.   GENOME RESEARCH

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

The genome sequence of the colonial chordate, Botryllus schlosseri

(2013) Ayelet Voskoboynik et al.   eLife

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY