Characterizing the Personalized Microbiota Dynamics for Disease Classification by Individual-Specific Edge-Network Analysis

Molecular phenomics and metagenomics of hepatic steatosis in non-diabetic obese women

(2018) Lesley Hoyles et al.   NATURE MEDICINE

Metaviz: interactive statistical and visual analysis of metagenomic data

(2018) Justin Wagner et al.   NUCLEIC ACIDS RESEARCH

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics

(2018) Alina Pushkarev et al.   NATURE

Detecting Personalized Determinants During Drug Treatment from Omics Big Data

(2018) Lu Wang et al.   CURRENT PHARMACEUTICAL DESIGN

Proliferation of enterotoxigenic Escherichia coli strain TW11681 in stools of experimentally infected human volunteers

(2018) Oda Barth Vedøy et al.   Gut Pathogens

Gut microbiota in 2017: Contribution of gut microbiota–host cooperation to drug efficacy

(2017) Nathalie M. Delzenne et al.   Nature Reviews Gastroenterology & Hepatology

Individual-specific edge-network analysis for disease prediction

(2017) Xiangtian Yu et al.   NUCLEIC ACIDS RESEARCH

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis

(2017) Jaeyun Sung et al.   Nature Communications

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

(2016) Mihai Pop et al.   BMC GENOMICS

The evolution of cooperation within the gut microbiota

(2016) Seth Rakoff-Nahoum et al.   NATURE

Dysfunctional gut microbiota and relative co-abundance network in infantile eczema

(2016) Heping Wang et al.   Gut Pathogens

Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals

(2015) Tao Zeng et al.   BRIEFINGS IN BIOINFORMATICS

Unravelling personalized dysfunctional gene network of complex diseases based on differential network model

(2015) Xiangtian Yu et al.   Journal of Translational Medicine

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

Antidiabetic drug treatment confounds gut dysbiosis associated with type 2 diabetes mellitus

(2015) David Holmes   Nature Reviews Endocrinology

Prediction of dynamical drug sensitivity and resistance by module network rewiring-analysis based on transcriptional profiling

(2014) Tao Zeng et al.   DRUG RESISTANCE UPDATES

Miniaturized Cultivation of Microbiota for Antimalarial Drug Discovery

(2014) Carrie Waterman et al.   MEDICINAL RESEARCH REVIEWS

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

(2014) Austin G. Davis-Richardson et al.   Frontiers in Microbiology

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition

(2014) Mihai Pop et al.   GENOME BIOLOGY

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis

(2013) M. Li et al.   BRIEFINGS IN BIOINFORMATICS

Network biomarkers reveal dysfunctional gene regulations during disease progression

(2013) Tao Zeng et al.   FEBS Journal

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis

(2013) Jacques Ravel et al.   Microbiome

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Reciprocal interactions of the intestinal microbiota and immune system

(2012) Craig L. Maynard et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

(2012) Luonan Chen et al.   Scientific Reports

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomics: Exploring unseen communities

(2008) Nathan Blow   NATURE

Gut microbiota: a potential new territory for drug targeting

(2008) Wei Jia et al.   NATURE REVIEWS DRUG DISCOVERY

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY