Soil bacterial and fungal communities of six bahiagrass cultivars

RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi

(2018) Ko-Hsuan Chen et al.   NEW PHYTOLOGIST

The beneficial root-colonizing fungus Mortierella hyalina promotes the aerial growth of Arabidopsis and activates calcium-dependent responses which restrict Alternaria brassicae-induced disease development in roots

(2018) Joy Michal Johnson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

(2017) J. Uehling et al.   ENVIRONMENTAL MICROBIOLOGY

Defining the taxonomic status of described subdivision 3 Acidobacteria: proposal of Bryobacteraceae fam. nov.

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Plant diversity represents the prevalent determinant of soil fungal community structure across temperate grasslands in northern China

(2017) Yong-Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Links between Soil Fungal Diversity and Plant and Soil Properties on the Loess Plateau

(2017) Yang Yang et al.   Frontiers in Microbiology

Isolating a functionally relevant guild of fungi from the root microbiome of Populus

(2016) Gregory Bonito et al.   Fungal Ecology

Microbial communities and diazotrophic activity differ in the root-zone of Alamo and Dacotah switchgrass feedstocks

(2016) Richard R. Rodrigues et al.   Global Change Biology Bioenergy

Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria

(2016) Sai Shiva Krishna Prasad Vurukonda et al.   MICROBIOLOGICAL RESEARCH

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Biological nitrification inhibition by rice root exudates and its relationship with nitrogen-use efficiency

(2016) Li Sun et al.   NEW PHYTOLOGIST

Identification of several wheat landraces with biological nitrification inhibition capacity

(2016) Cathryn A. O’Sullivan et al.   PLANT AND SOIL

Characterization of Pajaroellobacter abortibovis , the etiologic agent of epizootic bovine abortion

(2016) Roxann S. Brooks et al.   VETERINARY MICROBIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

(2016) Tess E. Brewer et al.   Nature Microbiology

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes – a genome comparison

(2016) Frances Patricia Jones et al.   Scientific Reports

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

(2016) Kristin Kaiser et al.   Scientific Reports

Molecular Mechanisms of Nematode-Nematophagous Microbe Interactions: Basis for Biological Control of Plant-Parasitic Nematodes

(2015) Juan Li et al.   Annual Review of Phytopathology

Bacterial diversity of Drass, cold desert in Western Himalaya, and its comparison with Antarctic and Arctic

(2015) Puja Gupta et al.   ARCHIVES OF MICROBIOLOGY

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth

(2015) Takuro Nunoura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant diversity increases soil microbial activity and soil carbon storage

(2015) Markus Lange et al.   Nature Communications

Tall fescue cultivar and fungal endophyte combinations influence plant growth and root exudate composition

(2015) Jingqi Guo et al.   Frontiers in Plant Science

Diversity of Nitrogen-Fixing Bacteria Associated with Switchgrass in the Native Tallgrass Prairie of Northern Oklahoma

(2014) Rahul A. Bahulikar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species richness of arbuscular mycorrhizal fungi: associations with grassland plant richness and biomass

(2014) Inga Hiiesalu et al.   NEW PHYTOLOGIST

Parsing ecological signal from noise in next generation amplicon sequencing

(2014) Nhu H. Nguyen et al.   NEW PHYTOLOGIST

Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

(2014) Guo-Chun Ding et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Synergistic effect of a phosphate-solubilizing fungus and an arbuscular mycorrhizal fungus on leucaena seedlings in an Oxisol fertilized with rock phosphate

(2013) Nelson Walter Osorio et al.   Botany

Soil Phosphate Desorption Induced by a Phosphate-Solubilizing Fungus

(2013) Nelson Walter Osorio et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

A comprehensive molecular phylogeny of the Mortierellales (Mortierellomycotina) based on nuclear ribosomal DNA

(2013) L. Wagner et al.   PERSOONIA

Diversity of Rhizosphere Soil Arbuscular Mycorrhizal Fungi in Various Soybean Cultivars under Different Continuous Cropping Regimes

(2013) Weiguang Jie et al.   PLoS One

Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils

(2013) Seema B Sharma et al.   SpringerPlus

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Unravelling Soil Fungal Communities from Different Mediterranean Land-Use Backgrounds

(2012) Alberto Orgiazzi et al.   PLoS One

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Interactions between arbuscular mycorrhizal fungi and phosphate-solubilizing fungus (Mortierella sp.) and their effects on Kostelelzkya virginica growth and enzyme activities of rhizosphere and bulk soils at different salinities

(2011) Huanshi Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

Roles of Arbuscular Mycorrhizas in Plant Phosphorus Nutrition: Interactions between Pathways of Phosphorus Uptake in Arbuscular Mycorrhizal Roots Have Important Implications for Understanding and Manipulating Plant Phosphorus Acquisition

(2011) S. E. Smith et al.   PLANT PHYSIOLOGY

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture

(2011) P. N. Bhattacharyya et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Soil beneficial bacteria and their role in plant growth promotion: a review

(2010) Rifat Hayat et al.   ANNALS OF MICROBIOLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeography and phylogeography of Fusarium: a review

(2010) Brett A. Summerell et al.   FUNGAL DIVERSITY

Functional diversity of microbial decomposers facilitates plant coexistence in a plant-microbe-soil feedback model

(2010) T. Miki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arbuscular mycorrhizal fungi in alleviation of salt stress: a review

(2009) Heikham Evelin et al.   ANNALS OF BOTANY

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Occurrence and distribution of arbuscular mycorrhizal fungal species in three types of grassland community of the Tibetan Plateau

(2009) J. P. Gai et al.   ECOLOGICAL RESEARCH

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

A general suite of fungal endophytes dominate the roots of two dominant grasses in a semiarid grassland

(2009) H.H. Khidir et al.   JOURNAL OF ARID ENVIRONMENTS

Vegetation Affects the Relative Abundances of Dominant Soil Bacterial Taxa and Soil Respiration Rates in an Upland Grassland Soil

(2009) Bruce C. Thomson et al.   MICROBIAL ECOLOGY

Myxobacteria—‘microbial factories’ for the production of bioactive secondary metabolites

(2009) Silke C. Wenzel et al.   Molecular BioSystems

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Evidence for biological nitrification inhibition in Brachiaria pastures

(2009) G. V. Subbarao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth promotion and Penicillium citrinum

(2008) Sumera Khan et al.   BMC MICROBIOLOGY

PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS

(2008) Jennifer A. Schweitzer et al.   ECOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Distantly sampled soils carry few species in common

(2008) Roberta R Fulthorpe et al.   ISME Journal

Detection, isolation and characterization of a root-exuded compound, methyl 3-(4-hydroxyphenyl) propionate, responsible for biological nitrification inhibition by sorghum (Sorghum bicolor)

(2008) Hossain A. K. M. Zakir et al.   NEW PHYTOLOGIST

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE

Denitrification activity of Bradyrhizobium sp. isolated from Argentine soybean cultivated soils

(2008) Leticia Andrea Fernández et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY