Metagenomic survey of the bacterial communities in the rhizosphere of three Andean tuber crops

Environmental factors shaping the diversity of bacterial communities that promote rice production

(2018) Zhaohui Wu et al.   BMC MICROBIOLOGY

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Comparative genomics of the DNA damage-inducible network in the Patescibacteria

(2017) Miquel Sánchez-Osuna et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization and potential of plant growth promoting rhizobacteria isolated from native Andean crops

(2017) Katty Ogata-Gutiérrez et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The Variation in the Rhizosphere Microbiome of Cotton with Soil Type, Genotype and Developmental Stage

(2017) Qinghua Qiao et al.   Scientific Reports

Characterization of the prokaryotic diversity through a stratigraphic permafrost core profile from the Qinghai-Tibet Plateau

(2016) Weigang Hu et al.   EXTREMOPHILES

A Global eDNA Comparison of Freshwater Bacterioplankton Assemblages Focusing on Large-River Floodplain Lakes of Brazil

(2016) Michael Tessler et al.   MICROBIAL ECOLOGY

Differences in Bacterial Diversity and Communities Between Glacial Snow and Glacial Soil on the Chongce Ice Cap, West Kunlun Mountains

(2016) Guang Li Yang et al.   Scientific Reports

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

(2015) Xiaoqing Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

The microbial diversity, distribution, and ecology of permafrost in China: a review

(2015) Weigang Hu et al.   EXTREMOPHILES

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

The response of root-associated bacterial community to the grafting of watermelon

(2015) Ning Ling et al.   PLANT AND SOIL

Reduced dependence of rhizosphere microbiome on plant-derived carbon in 32-year long-term inorganic and organic fertilized soils

(2015) Chao Ai et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle

(2015) William C. Nelson et al.   Frontiers in Microbiology

The Role of Microbial Inoculants in Integrated Crop Management Systems

(2015) Siva L. S. Velivelli et al.   POTATO RESEARCH

Site and Clone Effects on the Potato Root-Associated Core Microbiome and its Relationship to Tuber Yield and Nutrients

(2014) Brittany A. Barnett et al.   AMERICAN JOURNAL OF POTATO RESEARCH

Evolution of bacterial communities in the wheat crop rhizosphere

(2014) Suzanne Donn et al.   ENVIRONMENTAL MICROBIOLOGY

Plant age and genotype affect the bacterial community composition in the tuber rhizosphere of field-grown sweet potato plants

(2014) Joana M. Marques et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska

(2014) Hye Min Kim et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial Community Structure in Two Permafrost Wetlands on the Tibetan Plateau and Sanjiang Plain, China

(2014) Juanli Yun et al.   MICROBIAL ECOLOGY

Identification of mVOCs from Andean Rhizobacteria and Field Evaluation of Bacterial and Mycorrhizal Inoculants on Growth of Potato in its Center of Origin

(2014) Siva L. S. Velivelli et al.   MICROBIAL ECOLOGY

Biotic Interactions in the Rhizosphere: A Diverse Cooperative Enterprise for Plant Productivity

(2014) C. De-la-Pena et al.   PLANT PHYSIOLOGY

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

(2014) Xuesong He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Recently Deglaciated High-Altitude Soils of the Himalaya: Diverse Environments, Heterogenous Bacterial Communities and Long-Range Dust Inputs from the Upper Troposphere

(2013) Blaz Stres et al.   PLoS One

High Bacterial Diversity of Biological Soil Crusts in Water Tracks over Permafrost in the High Arctic Polar Desert

(2013) Blaire Steven et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioprospecting in potato fields in the Central Andean Highlands: Screening of rhizobacteria for plant growth-promoting properties

(2013) Jonas Ghyselinck et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Green Revolution: Impacts, limits, and the path ahead

(2012) P. L. Pingali   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil

(2012) Adela García-Salamanca et al.   Microbial Biotechnology

Efficient soil microorganisms: A new dimension for sustainable agriculture and environmental development

(2011) Jay Shankar Singh et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soils

(2011) Nagissa Mahmoudi et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing

(2011) Özgül İnceoğlu et al.   PLoS One

Bacterial Community Diversity in the Brazilian Atlantic Forest Soils

(2010) Thiago Bruce et al.   MICROBIAL ECOLOGY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community structure and carbon turnover in permafrost-affected soils of the Lena Delta, northeastern SiberiaThis article is one of a selection of papers in the Special Issue on Polar and Alpine Microbiology.

(2009) Dirk Wagner et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Plant-rhizobacteria interactions alleviate abiotic stress conditions

(2009) CHRISTIAN DIMKPA et al.   PLANT CELL AND ENVIRONMENT

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY