标题
PatchSearch: a web server for off-target protein identification
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-05-22
DOI
10.1093/nar/gkz478
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- DeepDrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network
- (2019) Limeng Pu et al. PLoS Computational Biology
- Comparative assessment of strategies to identify similar ligand-binding pockets in proteins
- (2018) Rajiv Gandhi Govindaraj et al. BMC BIOINFORMATICS
- PatchSearch: A Fast Computational Method for Off-Target Detection
- (2017) Inès Rasolohery et al. Journal of Chemical Information and Modeling
- Vinardo: A Scoring Function Based on Autodock Vina Improves Scoring, Docking, and Virtual Screening
- (2016) Rodrigo Quiroga et al. PLoS One
- PCalign: a method to quantify physicochemical similarity of protein-protein interfaces
- (2015) Shanshan Cheng et al. BMC BIOINFORMATICS
- NGL Viewer: a web application for molecular visualization
- (2015) Alexander S. Rose et al. NUCLEIC ACIDS RESEARCH
- Creation of a free, Internet-accessible database: the Multiple Target Ligand Database
- (2015) Chao Chen et al. Journal of Cheminformatics
- Benchmark Data Sets for Structure-Based Computational Target Prediction
- (2014) Karen T. Schomburg et al. Journal of Chemical Information and Modeling
- eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models
- (2014) Michal Brylinski PLoS Computational Biology
- Fast protein fragment similarity scoring using a Binet–Cauchy kernel
- (2013) Frédéric Guyon et al. BIOINFORMATICS
- Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise
- (2013) David Ryan Koes et al. Journal of Chemical Information and Modeling
- Identification of Similar Binding Sites to Detect Distant Polypharmacology
- (2013) Xavier Jalencas et al. Molecular Informatics
- Chemogenomics in drug discovery: computational methods based on the comparison of binding sites
- (2012) Anna Vulpetti et al. Future Medicinal Chemistry
- idTarget: a web server for identifying protein targets of small chemical molecules with robust scoring functions and a divide-and-conquer docking approach
- (2012) Jui-Chih Wang et al. NUCLEIC ACIDS RESEARCH
- Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparison
- (2011) Lee Sael et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding
- (2011) Tianyun Liu et al. PLoS Computational Biology
- ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment
- (2010) Janez Konc et al. BIOINFORMATICS
- A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
- (2010) Brice Hoffmann et al. BMC BIOINFORMATICS
- Binding Ligand Prediction for Proteins Using Partial Matching of Local Surface Patches
- (2010) Lee Sael et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Predicting Polypharmacology by Binding Site Similarity: From Kinases to the Protein Universe
- (2010) Francesca Milletti et al. Journal of Chemical Information and Modeling
- Mobyle: a new full web bioinformatics framework
- (2009) B. Neron et al. BIOINFORMATICS
- PocketMatch: A new algorithm to compare binding sites in protein structures
- (2009) Kalidas Yeturu et al. BMC BIOINFORMATICS
- Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
- (2009) Andrew C. Wallace et al. PROTEIN SCIENCE
- Fast unfolding of communities in large networks
- (2008) Vincent D Blondel et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions
- (2008) A. Shulman-Peleg et al. NUCLEIC ACIDS RESEARCH
- A note on the problem of reporting maximal cliques
- (2008) F. Cazals et al. THEORETICAL COMPUTER SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now