标题
A multiscale analysis of DNA phase separation: from atomistic to mesoscale level
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-05-10
DOI
10.1093/nar/gkz377
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Exploring DNA dynamics within oligonucleosomes with coarse-grained simulations: SIRAH force field extension for protein-DNA complexes
- (2018) Astrid Brandner et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Coarse-grained simulation of DNA using LAMMPS
- (2018) Oliver Henrich et al. EUROPEAN PHYSICAL JOURNAL E
- Collapse of DNA in packaging and cellular transport
- (2018) T.J. Thomas et al. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- Sequence-dependent DNA condensation as a driving force of DNA phase separation
- (2018) Hyunju Kang et al. NUCLEIC ACIDS RESEARCH
- New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions
- (2018) Jejoong Yoo et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Magic v.3: An integrated software package for systematic structure-based coarse-graining
- (2018) Alexander Mirzoev et al. COMPUTER PHYSICS COMMUNICATIONS
- Toroidal Condensates by Semiflexible Polymer Chains: Insights into Nucleation, Growth and Packing Defects
- (2017) Atreya Dey et al. JOURNAL OF PHYSICAL CHEMISTRY B
- All-Atom MD Simulation of DNA Condensation Using Ab Initio Derived Force Field Parameters of Cobalt(III)-Hexammine
- (2017) Tiedong Sun et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Phase separation drives heterochromatin domain formation
- (2017) Amy R. Strom et al. NATURE
- Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
- (2017) Adam G. Larson et al. NATURE
- Multiscale simulation of DNA
- (2016) Pablo D Dans et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The structure and intermolecular forces of DNA condensates
- (2016) Jejoong Yoo et al. NUCLEIC ACIDS RESEARCH
- Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
- (2015) Benedict E. K. Snodin et al. JOURNAL OF CHEMICAL PHYSICS
- Coarse-Grained Ions for Nucleic Acid Modeling
- (2015) Daniel M. Hinckley et al. Journal of Chemical Theory and Computation
- Compaction of bacterial genomic DNA: clarifying the concepts
- (2015) Marc Joyeux JOURNAL OF PHYSICS-CONDENSED MATTER
- A Solvent-Mediated Coarse-Grained Model of DNA Derived with the Systematic Newton Inversion Method
- (2014) Aymeric Naômé et al. Journal of Chemical Theory and Computation
- Comparative structure of vertebrate sperm chromatin
- (2014) Juan Ausió et al. JOURNAL OF STRUCTURAL BIOLOGY
- A Coarse-Grained DNA Model Parameterized from Atomistic Simulations by Inverse Monte Carlo
- (2014) Nikolay Korolev et al. Polymers
- An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization
- (2013) Daniel M. Hinckley et al. JOURNAL OF CHEMICAL PHYSICS
- MagiC: Software Package for Multiscale Modeling
- (2013) Alexander Mirzoev et al. Journal of Chemical Theory and Computation
- An Advanced Coarse-Grained Nucleosome Core Particle Model for Computer Simulations of Nucleosome-Nucleosome Interactions under Varying Ionic Conditions
- (2013) Yanping Fan et al. PLoS One
- Coarse-grained molecular simulations of large biomolecules
- (2012) Shoji Takada CURRENT OPINION IN STRUCTURAL BIOLOGY
- A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation
- (2012) Nikolay Korolev et al. NUCLEIC ACIDS RESEARCH
- Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective
- (2012) Pascal Carrivain et al. Soft Matter
- Coarse-Grained Simulations of Macromolecules: From DNA to Nanocomposites
- (2011) Juan J. de Pablo Annual Review of Physical Chemistry
- Deciphering the structure of DNA toroids
- (2011) Laurence R. Brewer Integrative Biology
- Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
- (2011) Jejoong Yoo et al. Journal of Physical Chemistry Letters
- Effective solvent mediated potentials of Na+ and Cl− ions in aqueous solution: temperature dependence
- (2011) Alexander Mirzoev et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics
- (2010) Pablo D. Dans et al. Journal of Chemical Theory and Computation
- Direct construction of mesoscopic models from microscopic simulations
- (2010) Huan Lei et al. PHYSICAL REVIEW E
- Chemically accurate coarse graining of double-stranded DNA
- (2010) A. Savelyev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cation-induced polyelectrolyte–polyelectrolyte attraction in solutions of DNA and nucleosome core particles
- (2009) Nikolay Korolev et al. ADVANCES IN COLLOID AND INTERFACE SCIENCE
- Mori–Zwanzig formalism as a practical computational tool
- (2009) Carmen Hijón et al. FARADAY DISCUSSIONS
- Systematic coarse-graining of molecular models by the Newton inversion method
- (2009) Alexander Lyubartsev et al. FARADAY DISCUSSIONS
- Structure of toroidal DNA collapsed inside the phage capsid
- (2009) A. Leforestier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now