Random PCR‐based genotyping by sequencing technology GRAS‐Di (genotyping by random amplicon sequencing, direct) reveals genetic structure of mangrove fishes

The integration and application of genomic information in mangrove conservation

(2018) Alison K. S. Wee et al.   CONSERVATION BIOLOGY

Dependence of fish on subtropical riverine mangroves as habitat in the Ryukyu Islands, Japan

(2018) Allyn Duvin S. Pantallano et al.   FISHERIES SCIENCE

Phylogeographic analysis suggests two origins for the riparian azalea Rhododendron indicum (L.) Sweet

(2018) Watanabe Yoichi et al.   HEREDITY

Understanding and managing fish populations: keeping the toolbox fit for purpose

(2018) J. R. Paris et al.   JOURNAL OF FISH BIOLOGY

Reconstruction of the salinity history associated with movements of mangrove fishes using otolith oxygen isotopic analysis

(2018) K Shirai et al.   MARINE ECOLOGY PROGRESS SERIES

Oceanographic, acoustic, and remote approaches reveal the spatio-temporal dynamics of blackfin snapper at an aggregation site in Palau

(2018) M Cimino et al.   MARINE ECOLOGY PROGRESS SERIES

Conservation and restoration of mangroves: Global status, perspectives, and prognosis

(2018) Stephanie S. Romañach et al.   OCEAN & COASTAL MANAGEMENT

Reconstruction of the salinity history associated with movements of mangrove fishes using otolith oxygen isotopic analysis

(2018) K Shirai et al.   MARINE ECOLOGY PROGRESS SERIES

Oceanographic, acoustic, and remote approaches reveal the spatio-temporal dynamics of blackfin snapper at an aggregation site in Palau

(2018) M Cimino et al.   MARINE ECOLOGY PROGRESS SERIES

From conservation genetics to conservation genomics: a genome-wide assessment of blue whales ( Balaenoptera musculus ) in Australian feeding aggregations

(2018) Catherine R. M. Attard et al.   Royal Society Open Science

Patterns and trends in marine population connectivity research

(2017) DN Bryan-Brown et al.   MARINE ECOLOGY PROGRESS SERIES

Seascape genomics reveals fine-scale patterns of dispersal for a reef fish along the ecologically divergent coast of Northwestern Australia

(2017) Joseph D. DiBattista et al.   MOLECULAR ECOLOGY

Genome-wide single-nucleotide polymorphism data reveal cryptic species within cryptic freshwater snail species-The case of the Ancylus fluviatilis species complex

(2017) Martina Weiss et al.   Ecology and Evolution

Patterns and trends in marine population connectivity research

(2017) DN Bryan-Brown et al.   MARINE ECOLOGY PROGRESS SERIES

RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity

(2017) David L. J. Vendrami et al.   Royal Society Open Science

What genomic data can reveal about eco-evolutionary dynamics

(2017) Seth M. Rudman et al.   Nature Ecology & Evolution

Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation

(2017) Carlos Carreras et al.   Scientific Reports

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform

(2015) Yoshihisa Suyama et al.   Scientific Reports

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Utilization patterns of estuarine and marine habitats by the halfbeak Zenarchopterus dunckeri at Iriomote Island, southern Japan, evaluated from otolith microchemistry

(2014) Takahiro Kanai et al.   FISHERIES SCIENCE

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Age, growth, and reproductive biology of blacktail snapper, Lutjanus fulvus, around the Yaeyama Islands, Okinawa, Japan

(2014) Tamaki Shimose et al.   ICHTHYOLOGICAL RESEARCH

Differences in fish assemblage structure between vegetated and unvegetated microhabitats in relation to food abundance patterns in a mangrove creek

(2013) Kusuto Nanjo et al.   FISHERIES SCIENCE

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Numerical study of surface water circulation around Sekisei Lagoon, southwest Japan

(2010) Li-Feng Lu et al.   OCEAN DYNAMICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus)

(2009) Michelle R. Gaither et al.   JOURNAL OF BIOGEOGRAPHY

Recruitment and ontogenetic habitat shifts of the yellow snapper (Lutjanus argentiventris) in the Gulf of California

(2009) Octavio Aburto-Oropeza et al.   MARINE BIOLOGY

The habitat function of mangroves for terrestrial and marine fauna: A review

(2008) I. Nagelkerken et al.   AQUATIC BOTANY

Habitat use patterns of fishes across the mangrove-seagrass-coral reef seascape at Ishigaki Island, southern Japan

(2008) Takuro Shibuno et al.   ICHTHYOLOGICAL RESEARCH

Evidence of ontogenetic migration from mangroves to coral reefs by black-tail snapper Lutjanus fulvus: stable isotope approach

(2008) Y Nakamura et al.   MARINE ECOLOGY PROGRESS SERIES