Article
Biotechnology & Applied Microbiology
Hong Li, Jiang Zhu, Yue Xiao, Shiyao Zhang, Yuwei Sun, Zhijia Liu, Chuanqi Chu, Xiaosong Hu, Junjie Yi
Summary: The diversity of lactic acid bacteria (LAB) in fermented foods in Yunnan lacks large-scale and systematic research. 638 fermented foods were collected from 84 regions in Yunnan for diversity analyses. Results showed different dominant strains in various types of fermented foods. Lactobacillus plantarum (L. plantarum) was the most abundant strain, widely distributed in the 84 regions, with genetic diversity mainly represented by functional genes and carbohydrate utilization.
FERMENTATION-BASEL
(2023)
Article
Multidisciplinary Sciences
Maria Skrabisova, Nicholas Dietz, Shuai Zeng, Yen On Chan, Juexin Wang, Yang Liu, Jana Biova, Trupti Joshi, Kristin D. Bilyeu
Summary: This article introduces the use of synthetic phenotypes and the accuracy calculation to evaluate the correspondence between genomic variants and phenotypes, leading to a more effective evaluation of GWAS associations. The findings provide crucial information for researchers in causative mutation discovery.
JOURNAL OF ADVANCED RESEARCH
(2022)
Article
Ecology
Tatyana Zamkovaya, Jamie S. Foster, Valerie de Crecy-Lagard, Ana Conesa
Summary: Microbial dark matter, consisting of unknown microbes, plays essential ecological roles and occupies top hubs within their communities. Excluding unknown taxa results in a reduction in network centrality measures, highlighting the importance of these unknown organisms.
Article
Biochemistry & Molecular Biology
Peijun Tian, Ying Chen, Xin Qian, Renying Zou, Huiyue Zhu, Jianxin Zhao, Hao Zhang, Gang Wang, Wei Chen
Summary: The Pediococcus acidilactici strain CCFM6432 has shown psychobiotic potential by improving gut microbial composition, regulating anxiety-like behaviors, and reducing HPA axis hyperactivity. Its key compound for antimicrobial activity was confirmed to be lactic acid, paving the way for potential mental health management during daily life, especially amid the COVID-19 pandemic.
Article
Microbiology
Jinyi Xu, Keyi Zhang, Yufan Lin, Mengxin Li, Xuekai Wang, Qiang Yu, Hong Sun, Qiming Cheng, Yixiao Xie, Chunmei Wang, Ping Li, Chao Chen, Fuyu Yang, Yulong Zheng
Summary: This study evaluated the effects of cellulase and Lactobacillus plantarum on oat ensiling with different moisture contents. The results showed that the addition of cellulase and lactic acid bacteria improved oat fermentation quality, with better performances obtained in the group with moderate moisture content and longer ensiling time. Adding cellulase and lactic acid bacteria at the appropriate moisture content could be helpful for producing high-quality oat silage and enhance the effects of bacteria and enzymes.
FRONTIERS IN MICROBIOLOGY
(2022)
Review
Food Science & Technology
Luc De Vuyst, Andrea Comasio, Simon Van Kerrebroeck
Summary: This article reviews the fermentation strategies and microbial ecology of sourdough production, with a focus on non-flour ingredients. Different types of sourdough production are classified based on the inoculum used. Traditional recipes for Type 1 sourdough often include non-flour ingredients as a microbial inoculum source or fermentation substrates.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
(2023)
Article
Multidisciplinary Sciences
Pi-Hua Liu, Gwo-Tsann Chuang, Chia-Ni Hsiung, Wei-Shun Yang, Hsiao-Chia Ku, Yi-Ching Lin, Yi-Shun Chen, Yu-Yao Huang, Chia-Hung Lin, Wen-Yi Li, Jou-Wei Lin, Chih-Neng Hsu, Juey-Jen Hwang, Karen Chia-Wen Liao, Meng-Lun Hsieh, Hsiao-Lin Lee, Chen-Yang Shen, Yi-Cheng Chang
Summary: This study conducted a genome-wide association study for melatonin secretion using morning urine samples and identified five candidate genetic loci associated with melatonin level.
SCIENTIFIC REPORTS
(2022)
Article
Critical Care Medicine
Tamara Hernandez-Beeftink, Beatriz Guillen-Guio, Jose M. Lorenzo-Salazar, Almudena Corrales, Eva Suarez-Pajes, Rui Feng, Luis A. Rubio-Rodriguez, Megan L. Paynton, Raquel Cruz, M. Isabel Garcia-Laorden, Miryam Prieto-Gonzalez, Aurelio Rodriguez-Perez, Demetrio Carriedo, Jesus Blanco, Alfonso Ambros, Elena Gonzalez-Higueras, Elena Espinosa, Arturo Muriel, Eduardo Tamayo, Maria M. Martin, Leonardo Lorente, David Dominguez, Abelardo Garcia de Lorenzo, Heather M. Giannini, John P. Reilly, Tiffanie K. Jones, Jose M. Anon, Marina Soro, Angel Carracedo, Louise Wain, Nuala J. Meyer, Jesus Villar, Carlos Flores
Summary: Sepsis is a severe systemic inflammatory response to infections with high mortality rate. First GWAS of 28-day sepsis survival identified novel variants associated with reduced survival, including a missense variant in SAMD9. Further studies with larger sample sizes are needed to validate the findings.
Review
Plant Sciences
Muez Berhe, Komivi Dossa, Jun You, Pape Adama Mboup, Idrissa Navel Diallo, Diaga Diouf, Xiurong Zhang, Linhai Wang
Summary: The study reviewed the progress in discovering important traits in sesame through the GWAS method, developed a new online database SiGeDiD, and tested various new GWAS multi-locus models for the first time in sesame.
Article
Biochemistry & Molecular Biology
Carolina S. Carvalho, Brenna R. Forester, Simone K. Mitre, Ronnie Alves, Vera L. Imperatriz-Fonseca, Silvio J. Ramos, Luciana C. Resende-Moreira, Jose O. Siqueira, Leonardo C. Trevelin, Cecilio F. Caldeira, Markus Gastauer, Rodolfo Jaffe
Summary: The study introduces a comprehensive landscape genomic approach for restoring moderately disturbed and highly degraded sites, using genomic data to identify adaptive genotypes for different plant populations. The research reveals that different restoration strategies should be adopted for sites with different degradation levels, helping to define site-specific provenancing strategies for restoration initiatives.
MOLECULAR ECOLOGY RESOURCES
(2021)
Article
Microbiology
James J. Gilchrist, Kathryn Auckland, Tom Parks, Alexander J. Mentzer, Lily Goldblatt, Vivek Naranbhai, Gavin Band, Kirk A. Rockett, Ousmane B. Toure, Salimata Konate, Sibiri Sissoko, Abdoulaye A. Djimde, Mahamadou A. Thera, Ogobara K. Doumbo, Samba Sow, Sian Floyd, Jorg M. Ponnighaus, David K. Warndorff, Amelia C. Crampin, Paul E. M. Fine, Benjamin P. Fairfax, Adrian V. S. Hill
Summary: This study conducted a genome-wide association study of leprosy in individuals from Malawi and Mali, identifying previously reported risk loci and a novel susceptibility locus. The identified locus may have regulatory activity and evidence of recent positive selection, and shows pleiotropy with other diseases.
Article
Dentistry, Oral Surgery & Medicine
Rasha N. Alotaibi, Brian J. Howe, Jonathan M. Chernus, Nandita Mukhopadhyay, Carla Sanchez, Frederic W. B. Deleyiannis, Katherine Neiswanger, Carmencita Padilla, Fernando A. Poletta, Ieda M. Orioli, Carmen J. Buxo, Jacqueline T. Hecht, George L. Wehby, Ross E. Long, Alexandre R. Vieira, Seth M. Weinberg, John R. Shaffer, Lina M. Moreno Uribe, Mary L. Marazita
Summary: This study conducted a genome-wide association study to identify associations affecting susceptibility to caries in a large multiethnic population. The results identified several suggestive loci near genes with plausible biological roles for dental caries, which may lead to a better understanding of cariogenesis in diverse populations.
Article
Genetics & Heredity
Aleksandra Bojarczuk, Eugenia A. Boulygina, Magdalena Dzitkowska-Zabielska, Beata Lubkowska, Agata Leonska-Duniec, Emiliya S. Egorova, Ekaterina A. Semenova, Liliya B. Andryushchenko, Andrey K. Larin, Edward Generozov, Ildus I. Ahmetov, Pawel Cieszczyk
Summary: This study identified a rare T allele in the ACSL1 gene associated with higher fat loss efficiency in untrained women during aerobic training and lower BMI in male athletes.
Review
Chemistry, Multidisciplinary
Salma Aathika Abdur Rawoof, P. Senthil Kumar, Dai-Viet N. Vo, Kubendran Devaraj, Yuvarani Mani, Thiruselvi Devaraj, Sivanesan Subramanian
Summary: The biotransformation of organic wastes into high value-added products, particularly in the production of lactic acid, has gained significant attention. However, challenges such as achieving enhanced yield and productivity in large-scale fermentation still exist. Various solutions have been proposed, including the use of cheap substrates, improving yield and productivity, and eliminating inhibitors.
ENVIRONMENTAL CHEMISTRY LETTERS
(2021)
Article
Biotechnology & Applied Microbiology
Marknoah Chinenye Nwamba, Fubao Sun, Marie Rose Mukasekuru, Guojie Song, Jean Damascene Harindintwali, Samaila Ajeje Boyi, Haiyan Sun
Summary: Lactic acid, an important biomolecule extensively used in various industries, can be produced using microbial fermentation and lignocellulosic biomass as substrates. While challenges exist in utilizing lignocellulosic materials, potential solutions should be considered to maximize production benefits.
ENVIRONMENTAL TECHNOLOGY & INNOVATION
(2021)
Article
Food Science & Technology
Xiao Feng, Voon Kunn Ng, Marta Miks-Krajnik, Hongshun Yang
FOOD AND BIOPROCESS TECHNOLOGY
(2017)
Article
Food Science & Technology
Marta Miks-Krajnik, Hazel Sin Yue Lim, Qianwang Zheng, Matthew Turner, Hyun-Gyun Yuk
Article
Biotechnology & Applied Microbiology
Marta Miks-Krajnik, Yong-Jin Yoon, Dike O. Ukuku, Hyun-Gyun Yuk
Article
Food Science & Technology
Marta Miks-Krajnik, Lee Xuan James Feng, Woo Suk Bang, Hyun-Gyun Yuk
Article
Food Science & Technology
Kirt R. Phipps, Nigel Baldwin, Barry Lynch, Jessica Flaxmer, Alica Soltesova, Ben Gilby, Marta H. Miks, Christoph H. Rohrig
FOOD AND CHEMICAL TOXICOLOGY
(2018)
Article
Medicine, Legal
Kirt R. Phipps, Nigel Baldwin, Barry Lynch, Diane R. Stannard, Alica Soltesova, Ben Gilby, Marta H. Miks, Christoph H. Rohrig
REGULATORY TOXICOLOGY AND PHARMACOLOGY
(2018)
Review
Biochemical Research Methods
Katrine Bych, Marta Hanna Miks, Ted Johanson, Markus Jondelius Hederos, Louise Kristine Vigsnaes, Peter Becker
CURRENT OPINION IN BIOTECHNOLOGY
(2019)
Article
Toxicology
Kirt R. Phipps, Nigel J. Baldwin, Barry Lynch, Diane R. Stannard, Alica Soltesova, Ben Gilby, Marta H. Miks, Christoph H. Rohrig
JOURNAL OF APPLIED TOXICOLOGY
(2019)
Article
Toxicology
Kirt R. Phipps, Nigel J. Baldwin, Barry Lynch, Diane R. Stannard, Alica Soltesova, Ben Gilby, Marta H. Miks, Christoph H. Rohrig
JOURNAL OF APPLIED TOXICOLOGY
(2019)
Article
Toxicology
Kirt R. Phipps, Barry Lynch, Diane R. Stannard, Ben Gilby, Nigel Baldwin, Marta Hanna Miks, Annette Lau, Christoph H. Rohrig
Summary: Human milk oligosaccharides (HMOs) are bioactive molecules found in human breast milk, with potential applications in infant formula. The safety assessment of LNFP-I/2'-FL, a human-identical milk oligosaccharide, showed it to be non-genotoxic and safe for use in food products.
JOURNAL OF APPLIED TOXICOLOGY
(2021)
Review
Nutrition & Dietetics
Buket Soyyilmaz, Marta Hanna Miks, Christoph Hermann Rohrig, Martin Matwiejuk, Agnes Meszaros-Matwiejuk, Louise Kristine Vigsnaes
Summary: Human milk oligosaccharides (HMOs) are complex carbohydrates abundant in human milk, with over 200 different structures identified. The concentrations of HMOs in breast milk vary according to lactation period and mother's genetic status. Studies have shown significant variations in HMO concentrations for different types across lactation stages. In mature pooled human milk, the top 15 individual HMOs make up the majority of total HMO concentration.
Article
Toxicology
Kirt R. Phipps, Dayna Lozon, Diane R. Stannard, Ben Gilby, Nigel Baldwin, Marta Hanna Miks, Annette Lau, Christoph H. Rohrig
Summary: The study demonstrates the safety of biotechnologically produced 3-FL for use in infant formula, showing no adverse effects and supporting its potential benefits for infant growth and development.
JOURNAL OF APPLIED TOXICOLOGY
(2022)
Review
Microbiology
Sylvester Holt, Marta H. Miks, Bruna Trindade de Carvalho, Maria R. Foulquie-Moreno, Johan M. Thevelein
FEMS MICROBIOLOGY REVIEWS
(2019)