Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

Genomic and functional characterisation of IncX3 plasmids encoding blaSHV-12 in Escherichia coli from human and animal origin

(2018) Apostolos Liakopoulos et al.   Scientific Reports

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

blaNDM-5-Bearing IncFII-Type Plasmids of Klebsiella pneumoniae Sequence Type 147 Transmitted by Cross-Border Transfer of a Patient

(2016) Juyoun Shin et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

An Immunocompromised Child with Bloodstream Infection Caused by Two Escherichia coli Strains, One Harboring NDM-5 and the Other Harboring OXA-48-Like Carbapenemase

(2016) M. Earth Hasassri et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

NDM-4- and NDM-5-Producing Klebsiella pneumoniae Coinfection in a 6-Month-Old Infant

(2016) Hazim O. Khalifa et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Complete Sequences ofmcr-1-Harboring Plasmids from Extended-Spectrum-β-Lactamase- and Carbapenemase-Producing Enterobacteriaceae

(2016) Aiqing Li et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The first report of NDM-5–producing uropathogenic Escherichia coli isolates in South Korea

(2016) Min Park et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Emergence of an NDM-5-producing clinical Escherichia coli isolate in Egypt

(2016) Ahmed M. Soliman et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

First report of New Delhi metallo-β-lactamase 5 (NDM-5)-producing Escherichia coli from blood cultures of three leukemia patients

(2016) Li-ping Zhang et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Evidence of transmission of an NDM-5-producingKlebsiella pneumoniaein a healthcare facility in New Zealand: Table 1

(2016) Julia C. Howard et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Characterization of NDM-1- and OXA-23-producing Acinetobacter baumannii isolates from inanimate surfaces in a hospital environment in Algeria

(2016) K. Zenati et al.   JOURNAL OF HOSPITAL INFECTION

Emergence of the mcr-1 colistin resistance gene in carbapenem-resistant Enterobacteriaceae

(2016) Hong Du et al.   LANCET INFECTIOUS DISEASES

Emergence of Carbapenemase-ProducingEscherichia coliIsolated from Companion Animals in Algeria

(2016) Massilia Yousfi et al.   Microbial Drug Resistance

SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species

(2016) Daniel Veltri et al.   NUCLEIC ACIDS RESEARCH

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Further Spread of blaNDM-5 in Enterobacteriaceae via IncX3 Plasmids in Shanghai, China

(2016) Fangfang Zhang et al.   Frontiers in Microbiology

Global Dissemination of Carbapenemase-Producing Klebsiella pneumoniae: Epidemiology, Genetic Context, Treatment Options, and Detection Methods

(2016) Chang-Ro Lee et al.   Frontiers in Microbiology

First identification of NDM-5 associated with OXA-181 in Escherichia coli from Egypt

(2016) Doaa Gamal et al.   Emerging Microbes & Infections

Identification of an NDM-5-producing Escherichia coli Sequence Type 167 in a Neonatal Patient in China

(2016) Yuan-qi Zhu et al.   Scientific Reports

Colonization of Extended-Spectrum-β-Lactamase- and NDM-1-Producing Enterobacteriaceae among Pregnant Women in the Community in a Low-Income Country: a Potential Reservoir for Transmission of Multiresistant Enterobacteriaceae to Neonates

(2015) Fanny Chereau et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genomic Characteristics of NDM-Producing Enterobacteriaceae Isolates in Australia and TheirblaNDMGenetic Contexts

(2015) Alexander M. Wailan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

SalmonellaBacteremia Among Children in Central and Northwest Nigeria, 2008–2015

(2015) Stephen K. Obaro et al.   CLINICAL INFECTIOUS DISEASES

Bioinformatics of antimicrobial resistance in the age of molecular epidemiology

(2015) Andrew G McArthur et al.   CURRENT OPINION IN MICROBIOLOGY

Isolation of an NDM-5-producing ST16Klebsiella pneumoniaefrom a Dutch patient without travel history abroad, August 2015

(2015) Erik Bathoorn et al.   Eurosurveillance

Complete sequencing of an IncX3 plasmid carrying blaNDM-5allele reveals an early stage in the dissemination of the blaNDMgene

(2015) R Vaidyanathan et al.   Indian Journal of Medical Microbiology

Detection of Klebsiella pneumoniae co-producing NDM-7 and OXA-181, Escherichia coli producing NDM-5 and Acinetobacter baumannii producing OXA-23 in a single patient

(2015) Anette M. Hammerum et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Infection by and dissemination of NDM-5-producingEscherichia coliin China: Table 1.

(2015) Dongke Chen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Nosocomial Outbreak of New Delhi Metallo-β-Lactamase-1-Producing Gram-Negative Bacteria in South Africa: A Case-Control Study

(2015) Pieter de Jager et al.   PLoS One

NDM-5 Carbapenemase-Encoding Gene in Multidrug-Resistant Clinical Isolates of Escherichia coli from Algeria

(2014) Asma Sassi et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

First Report of Metallo-β-Lactamase NDM-5-Producing Escherichia coli in Japan

(2014) Ryuichi Nakano et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular Characterization ofblaNDM-5Carried on an IncFII Plasmid in an Escherichia coli Isolate from a Nontraveler Patient in Spain

(2014) Cristina Pitart et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Prevalence and molecular characterisation of New Delhi metallo-β-lactamases NDM-1, NDM-5, NDM-6 and NDM-7 in multidrug-resistant Enterobacteriaceae from India

(2014) Mohibur Rahman et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Worldwide Dissemination of the NDM-Type Carbapenemases in Gram-Negative Bacteria

(2014) Laurent Dortet et al.   Biomed Research International

Emergence of NDM-1 in Association with OXA-48 in Klebsiella pneumoniae from Tunisia

(2013) Adam Ben Nasr et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Emergence of Klebsiella pneumoniae co-producing NDM-type and OXA-181 carbapenemases

(2013) M.N.D. Balm et al.   CLINICAL MICROBIOLOGY AND INFECTION

Latent introduction to the Netherlands of multiple antibiotic resistance including NDM-1 after hospitalisation in Egypt, August 2013

(2013) E Bathoorn et al.   Eurosurveillance

Association of the Emerging Carbapenemase NDM-1 with a Bleomycin Resistance Protein in Enterobacteriaceae and Acinetobacter baumannii

(2012) Laurent Dortet et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

First report of aKlebsiella pneumoniaestrain coproducing NDM-1, VIM-1 and OXA-48 carbapenemases isolated in Morocco

(2012) Abouddihaj Barguigua et al.   APMIS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae

(2012) Timothy J. Johnson et al.   PLASMID

A Novel Variant, NDM-5, of the New Delhi Metallo-β-Lactamase in a Multidrug-Resistant Escherichia coli ST648 Isolate Recovered from a Patient in the United Kingdom

(2011) Michael Hornsey et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Community Acquired Bacteremia in Young Children from Central Nigeria- A Pilot Study

(2011) Stephen Obaro et al.   BMC INFECTIOUS DISEASES

Emergence of NDM-1-producing Klebsiella pneumoniae in Morocco

(2011) L. Poirel et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Emergence of New Delhi Metallo-Beta-Lactamase (NDM-1) and Klebsiella pneumoniae Carbapenemase (KPC-2) in South Africa

(2011) A. J. Brink et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Detection of NDM-1-ProducingKlebsiella pneumoniaein Kenya

(2010) Laurent Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of a New Metallo- -Lactamase Gene, blaNDM-1, and a Novel Erythromycin Esterase Gene Carried on a Unique Genetic Structure in Klebsiella pneumoniae Sequence Type 14 from India

(2009) D. Yong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY