k-Skip-n-Gram-RF: A Random Forest Based Method for Alzheimer's Disease Protein Identification

What Contributes to Serotonin–Norepinephrine Reuptake Inhibitors’ Dual-Targeting Mechanism? The Key Role of Transmembrane Domain 6 in Human Serotonin and Norepinephrine Transporters Revealed by Molecular Dynamics Simulation

(2018) Weiwei Xue et al.   ACS Chemical Neuroscience

Prediction of potential disease-associated microRNAs using structural perturbation method

(2018) Xiangxiang Zeng et al.   BIOINFORMATICS

DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function

(2018) Liang Cheng et al.   BIOINFORMATICS

Measuring phenotype-phenotype similarity through the interactome

(2018) Jiajie Peng et al.   BMC BIOINFORMATICS

Identifying diseases-related metabolites using random walk

(2018) Yang Hu et al.   BMC BIOINFORMATICS

InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

(2018) Liang Cheng et al.   BMC GENOMICS

ProtDet-CCH: Protein remote homology detection by combining Long Short-Term Memory and ranking methods

(2018) Bin Liu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

SeqSVM: A Sequence-Based Support Vector Machine Method for Identifying Antioxidant Proteins

(2018) Lei Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Alzheimer’s Disease rs11767557 Variant Regulates EPHA1 Gene Expression Specifically in Human Whole Blood

(2018) Guiyou Liu et al.   JOURNAL OF ALZHEIMERS DISEASE

Prediction of human protein subcellular localization using deep learning

(2018) Leyi Wei et al.   JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

Integration of deep feature representations and handcrafted features to improve the prediction of N 6 -methyladenosine sites

(2018) Leyi Wei et al.   NEUROCOMPUTING

Clinical Success of Drug Targets Prospectively Predicted by In Silico Study

(2018) Feng Zhu et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Discovery of the Consistently Well-Performed Analysis Chain for SWATH-MS Based Pharmacoproteomic Quantification

(2018) Jianbo Fu et al.   Frontiers in Pharmacology

A Novel Hybrid Sequence-Based Model for Identifying Anticancer Peptides

(2018) Lei Xu et al.   Genes

Developing a Multi-Dose Computational Model for Drug-induced Hepatotoxicity Prediction based on Toxicogenomics Data

(2018) Ran Su et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Enhanced Prediction of Hot Spots at Protein-Protein Interfaces Using Extreme Gradient Boosting

(2018) Hao Wang et al.   Scientific Reports

Identification of DNA-Binding Proteins via a Voting Strategy

(2018) Jun Zhang et al.   Current Proteomics

LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse

(2018) Liang Cheng et al.   NUCLEIC ACIDS RESEARCH

Disease status affects the association between rs4813620 and the expression of Alzheimer’s disease susceptibility geneTRIB3

(2018) Guiyou Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determining the Balance Between Drug Efficacy and Safety by the Network and Biological System Profile of Its Therapeutic Target

(2018) Xiao xu Li et al.   Frontiers in Pharmacology

KATZLGO: Large-scale Prediction of LncRNA Functions by Using the KATZ Measure Based on Multiple Networks

(2017) Zuping Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Meta-path methods for prioritizing candidate disease miRNAs

(2017) Xuan Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Integrating Multiple Heterogeneous Networks for Novel LncRNA-disease Association Inference

(2017) Jingpu Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Identification of drug-target interactions via multiple information integration

(2017) Yijie Ding et al.   INFORMATION SCIENCES

A novel method to measure the semantic similarity of HPO terms

(2017) Jiajie Peng et al.   International Journal of Data Mining and Bioinformatics

PSFM-DBT: Identifying DNA-Binding Proteins by Combing Position Specific Frequency Matrix and Distance-Bigram Transformation

(2017) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of Protein–Ligand Binding Sites by Sequence Information and Ensemble Classifier

(2017) Yijie Ding et al.   Journal of Chemical Information and Modeling

NOREVA: normalization and evaluation of MS-based metabolomics data

(2017) Bo Li et al.   NUCLEIC ACIDS RESEARCH

A comprehensive overview and evaluation of circular RNA detection tools

(2017) Xiangxiang Zeng et al.   PLoS Computational Biology

Spiking Neural P Systems with Colored Spikes

(2017) Tao Song et al.   IEEE Transactions on Cognitive and Developmental Systems

A Classification Method for Microarrays Based on Diversity

(2016) Xubo Wang et al.   Current Bioinformatics

Alzheimer’s Disease Variants with the Genome-Wide Significance are Significantly Enriched in Immune Pathways and Active in Immune Cells

(2016) Qinghua Jiang et al.   MOLECULAR NEUROBIOLOGY

PICALM rs3851179 Variant Confers Susceptibility to Alzheimer’s Disease in Chinese Population

(2016) Guiyou Liu et al.   MOLECULAR NEUROBIOLOGY

iMiRNA-SSF: Improving the Identification of MicroRNA Precursors by Combining Negative Sets with Different Distributions

(2016) Junjie Chen et al.   Scientific Reports

Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis

(2016) Bo Li et al.   Scientific Reports

Similarity computation strategies in the microRNA-disease network: a survey

(2015) Quan Zou et al.   Briefings in Functional Genomics

An Integrated Framework for Functional Annotation of Protein Structural Domains

(2015) Lei Deng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

Using distances between Top-n-gram and residue pairs for protein remote homology detection

(2014) Bin Liu et al.   BMC BIOINFORMATICS

Probabilistic Models for Capturing More Physicochemical Properties on Protein–Protein Interface

(2014) Fei Guo et al.   Journal of Chemical Information and Modeling

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set

(2013) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy

(2013) Chen Lin et al.   NEUROCOMPUTING

Small universal simple spiking neural P systems with weights

(2013) XiangXiang Zeng et al.   Science China-Information Sciences

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Protein-protein binding site identification by enumerating the configurations

(2012) Fei Guo et al.   BMC BIOINFORMATICS

Protein–Protein Binding Sites Prediction by 3D Structural Similarities

(2011) Fei Guo et al.   Journal of Chemical Information and Modeling