InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

A novel method to measure the semantic similarity of HPO terms

(2017) Jiajie Peng et al.   International Journal of Data Mining and Bioinformatics

Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms

(2015) Liang Cheng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Integrating ontologies of rare diseases and radiological diagnosis

(2015) C. E. Kahn   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Multi-label collective classification via Markov chain based learning method

(2014) Qingyao Wu et al.   KNOWLEDGE-BASED SYSTEMS

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

(2014) Warren A. Kibbe et al.   NUCLEIC ACIDS RESEARCH

Relating Diseases by Integrating Gene Associations and Information Flow through Protein Interaction Network

(2014) Mehdi Bagheri Hamaneh et al.   PLoS One

Diabetes Mellitus Increases Reactive Oxygen Species Production in the Thyroid of Male Rats

(2013) Maria C. S. Santos et al.   ENDOCRINOLOGY

YeastNet v3: a public database of data-specific and integrated functional gene networks forSaccharomyces cerevisiae

(2013) Hanhae Kim et al.   NUCLEIC ACIDS RESEARCH

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

(2013) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

SIDD: A Semantically Integrated Database towards a Global View of Human Disease

(2013) Liang Cheng et al.   PLoS One

NCBO Technology: Powering semantically aware applications

(2013) Patricia L Whetzel et al.   Journal of Biomedical Semantics

Information Flow in Interaction Networks II: Channels, Path Lengths, and Potentials

(2012) Aleksandar Stojmirović et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Markov-Miml: A Markov chain-based multi-instance multi-label learning algorithm

(2012) Qingyao Wu et al.   KNOWLEDGE AND INFORMATION SYSTEMS

The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data

(2012) Cynthia L. Smith et al.   MAMMALIAN GENOME

Database resources of the National Center for Biotechnology Information

(2012)   NUCLEIC ACIDS RESEARCH

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

(2012) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

The DNA Replication Stress Hypothesis of Alzheimer’s Disease

(2012) Yuri B. Yurov et al.   TheScientificWorldJOURNAL

Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community

(2011) Gary Schindelman et al.   BMC BIOINFORMATICS

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

Enabling semantic similarity estimation across multiple ontologies: An evaluation in the biomedical domain

(2011) David Sánchez et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The Human Phenotype Ontology

(2010) PN Robinson et al.   CLINICAL GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

ITM Probe: analyzing information flow in protein networks

(2009) A. Stojmirovic et al.   BIOINFORMATICS

Annotating the human genome with Disease Ontology

(2009) John D Osborne et al.   BMC GENOMICS

The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease

(2008) Peter N. Robinson et al.   AMERICAN JOURNAL OF HUMAN GENETICS