Genome-Wide Assessment of Avocado Germplasm Determined from Specific Length Amplified Fragment Sequencing and Transcriptomes: Population Structure, Genetic Diversity, Identification, and Application of Race-Specific Markers

Chinese Root-type Mustard Provides Phylogenomic Insights into the Evolution of the Multi-use Diversified Allopolyploid Brassica juncea

(2018) Jinghua Yang et al.   Molecular Plant

Rapid identification of a stripe rust resistant gene in a space-induced wheat mutant using specific locus amplified fragment (SLAF) sequencing

(2018) Jun-liang Yin et al.   Scientific Reports

High-Density Genetic Map Construction and Identification of QTLs Controlling Oleic and Linoleic Acid in Peanut using SLAF-seq and SSRs

(2018) X. H. Hu et al.   Scientific Reports

Comparison of transcriptome-derived simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers for genetic fingerprinting, diversity evaluation, and establishment of relationships in eggplants

(2017) Pietro Gramazio et al.   EUPHYTICA

Genome-wide assessment of population structure and genetic diversity and development of a core germplasm set for sweet potato based on specific length amplified fragment (SLAF) sequencing

(2017) Wenjin Su et al.   PLoS One

Genome-wide polymorphism detection in peanut using next-generation restriction-site-associated DNA (RAD) sequencing

(2015) Sudhir Kumar Gupta et al.   MOLECULAR BREEDING

Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing

(2013) Yanxin Zhang et al.   BMC PLANT BIOLOGY

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Molecular characterization of avocado germplasm with a new set of SSR and EST-SSR markers: genetic diversity, population structure, and identification of race-specific markers in a group of cultivated genotypes

(2012) Eduardo Gross-German et al.   Tree Genetics & Genomes

Development and linkage mapping of unigene-derived microsatellite markers in Brassica rapa L.

(2011) Yu Ge et al.   BREEDING SCIENCE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)

(2011) Alexandra M. Allen et al.   PLANT BIOTECHNOLOGY JOURNAL

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Tracing the Geographic Origins of Major Avocado Cultivars

(2008) H. Chen et al.   JOURNAL OF HEREDITY