More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics
出版年份 2019 全文链接
标题
More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 10, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2019-02-14
DOI
10.3389/fmicb.2019.00238
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- SDS-PAGE fractionation to increase metaproteomic insight into the taxonomic and functional composition of microbial communities for biogas plant samples
- (2018) Lisa Wenzel et al. ENGINEERING IN LIFE SCIENCES
- BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes
- (2018) Florian Meier et al. NATURE METHODS
- Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
- (2018) Manuel Kleiner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria
- (2018) Jackie K. Zorz et al. Frontiers in Microbiology
- An online 2D-reversed-phase – Reversed-phase chromatographic method for sensitive and robust plasma protein quantitation
- (2017) Vincent R. Richard et al. Journal of Proteomics
- Metaproteomic analysis of microbiota in the fermented fish, Siniperca chuatsi
- (2017) Chaofan Ji et al. LWT-FOOD SCIENCE AND TECHNOLOGY
- Assessing species biomass contributions in microbial communities via metaproteomics
- (2017) Manuel Kleiner et al. Nature Communications
- Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps
- (2017) Maxim Rubin-Blum et al. Nature Microbiology
- Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
- (2016) R. Heyer et al. Biotechnology for Biofuels
- Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
- (2016) Juliane Wippler et al. BMC GENOMICS
- Protein-SIP in environmental studies
- (2016) Nico Jehmlich et al. CURRENT OPINION IN BIOTECHNOLOGY
- Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns
- (2016) Emma Timmins-Schiffman et al. ISME Journal
- Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis
- (2016) Ruby Ponnudurai et al. ISME Journal
- The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
- (2016) Stefka Tyanova et al. Nature Protocols
- Nitrogen fixation in a chemoautotrophic lucinid symbiosis
- (2016) Sten König et al. Nature Microbiology
- Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation
- (2016) Jillian M. Petersen et al. Nature Microbiology
- Proteomic and high-throughput analysis of protein expression and microbial diversity of microbes from 30- and 300-year pit muds of Chinese Luzhou-flavor liquor
- (2015) Qi Zheng et al. FOOD RESEARCH INTERNATIONAL
- The role of protein and peptide separation before mass spectrometry analysis in clinical proteomics
- (2015) Serena Camerini et al. JOURNAL OF CHROMATOGRAPHY A
- One-hour proteome analysis in yeast
- (2015) Alicia L Richards et al. Nature Protocols
- 2016 update of the PRIDE database and its related tools
- (2015) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
- A decade of metaproteomics: Where we stand and what the future holds
- (2015) Paul Wilmes et al. PROTEOMICS
- Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
- (2015) Weili Xiong et al. PROTEOMICS
- Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case
- (2015) Jacque C. Young et al. PROTEOMICS
- Development of an Enhanced Metaproteomic Approach for Deepening the Microbiome Characterization of the Human Infant Gut
- (2014) Weili Xiong et al. JOURNAL OF PROTEOME RESEARCH
- Off-Line Multidimensional Liquid Chromatography and Auto Sampling Result in Sample Loss in LC/LC–MS/MS
- (2014) Sameh Magdeldin et al. JOURNAL OF PROTEOME RESEARCH
- Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes
- (2013) Leigh A. Weston et al. Analytical Methods
- Protein Analysis by Shotgun/Bottom-up Proteomics
- (2013) Yaoyang Zhang et al. CHEMICAL REVIEWS
- Marine metaproteomics: Current status and future directions
- (2013) Da-Zhi Wang et al. Journal of Proteomics
- Rapid and Deep Human Proteome Analysis by Single-dimension Shotgun Proteomics
- (2013) Mohammad Pirmoradian et al. MOLECULAR & CELLULAR PROTEOMICS
- The challenge of the proteome dynamic range and its implications for in-depth proteomics
- (2013) Roman A. Zubarev PROTEOMICS
- Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities
- (2012) Robert L. Hettich et al. CURRENT OPINION IN MICROBIOLOGY
- Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments
- (2012) Runar Stokke et al. ENVIRONMENTAL MICROBIOLOGY
- Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples
- (2012) Edward J. Hsieh et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Searching for a needle in a stack of needles: challenges in metaproteomics data analysis
- (2012) Thilo Muth et al. Molecular BioSystems
- Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use
- (2012) M. Kleiner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Soil metaproteomics – Comparative evaluation of protein extraction protocols
- (2012) Katharina M. Keiblinger et al. SOIL BIOLOGY & BIOCHEMISTRY
- Ultra-High-Pressure RPLC Hyphenated to an LTQ-Orbitrap Velos Reveals a Linear Relation between Peak Capacity and Number of Identified Peptides
- (2011) Thomas Köcher et al. ANALYTICAL CHEMISTRY
- Low-Abundance Biofilm Species Orchestrates Inflammatory Periodontal Disease through the Commensal Microbiota and Complement
- (2011) George Hajishengallis et al. Cell Host & Microbe
- Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics
- (2011) Antje Gardebrecht et al. ISME Journal
- Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
- (2011) Petr Baldrian et al. ISME Journal
- Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation
- (2011) Suman S. Thakur et al. MOLECULAR & CELLULAR PROTEOMICS
- System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap
- (2011) Nagarjuna Nagaraj et al. MOLECULAR & CELLULAR PROTEOMICS
- Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont
- (2011) Stephanie Markert et al. PROTEOMICS
- Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics
- (2011) Thomas Schneider et al. PROTEOMICS
- Environmental proteomics of microbial plankton in a highly productive coastal upwelling system
- (2010) Sarah M Sowell et al. ISME Journal
- Proteomics: a pragmatic perspective
- (2010) Parag Mallick et al. NATURE BIOTECHNOLOGY
- Cultivation and quantitative proteomic analyses of acidophilic microbial communities
- (2009) Christopher P Belnap et al. ISME Journal
- Automated 2D Peptide Separation on a 1D Nano-LC-MS System
- (2009) Paul Taylor et al. JOURNAL OF PROTEOME RESEARCH
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
- Functional analysis of natural microbial consortia using community proteomics
- (2009) Nathan C. VerBerkmoes et al. NATURE REVIEWS MICROBIOLOGY
- Power and limitations of electrophoretic separations in proteomics strategies
- (2008) Thierry Rabilloud et al. MASS SPECTROMETRY REVIEWS
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
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