GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization
出版年份 2019 全文链接
标题
GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization
作者
关键词
Genome analysis, Metadata, Salmonella enterica, Genomics, Listeria monocytogenes, Genomic databases, Molecular genetics, Data visualization
出版物
PLoS One
Volume 14, Issue 2, Pages e0213039
出版商
Public Library of Science (PLoS)
发表日期
2019-03-01
DOI
10.1371/journal.pone.0213039
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Nextstrain: real-time tracking of pathogen evolution
- (2018) James Hadfield et al. BIOINFORMATICS
- Next generation microbiological risk assessment—Potential of omics data for hazard characterisation
- (2018) Nabila Haddad et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations
- (2018) Arthur W. Pightling et al. Frontiers in Microbiology
- GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
- (2018) Zhemin Zhou et al. GENOME RESEARCH
- An Updated Scheme for Categorizing Foods Implicated in Foodborne Disease Outbreaks: A Tri-Agency Collaboration
- (2017) LaTonia Clay Richardson et al. Foodborne Pathogens and Disease
- Next generation of microbiological risk assessment: Potential of omics data for exposure assessment
- (2017) Heidy M.W. den Besten et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Next generation microbiological risk assessment: opportunities of whole genome sequencing (WGS) for foodborne pathogen surveillance, source tracking and risk assessment
- (2017) Kalliopi Rantsiou et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes
- (2017) Eric L. Stevens et al. Frontiers in Microbiology
- Towards an integrated food safety surveillance system: a simulation study to explore the potential of combining genomic and epidemiological metadata
- (2017) A. A. Hill et al. Royal Society Open Science
- Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation
- (2016) Brendan R. Jackson et al. CLINICAL INFECTIOUS DISEASES
- Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database
- (2016) Marc W. Allard et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Epidemiological and Microbiological Investigation of an Outbreak of Severe Disease from Shiga Toxin–Producing Escherichia coli O157 Infection Associated with Consumption of a Slaw Garnish
- (2016) LISA BYRNE et al. JOURNAL OF FOOD PROTECTION
- PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
- (2016) Bruno Ribeiro-Gonçalves et al. NUCLEIC ACIDS RESEARCH
- Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
- (2016) Eduardo Corel et al. TRENDS IN MICROBIOLOGY
- Significance of whole genome sequencing for surveillance, source attribution and microbial risk assessment of foodborne pathogens
- (2016) Eelco Franz et al. Current Opinion in Food Science
- dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
- (2015) Tal Galili BIOINFORMATICS
- Delineating Community Outbreaks of Salmonella enterica Serovar Typhimurium by Use of Whole-Genome Sequencing: Insights into Genomic Variability within an Outbreak
- (2015) Sophie Octavia et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica
- (2014) Pimlapas Leekitcharoenphon et al. PLoS One
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now