标题
Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica
作者
关键词
-
出版物
PLoS One
Volume 9, Issue 2, Pages e87991
出版商
Public Library of Science (PLoS)
发表日期
2014-02-05
DOI
10.1371/journal.pone.0087991
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- MLVA typing reveals higher genetic homogeneity among S. Enteritidis strains isolated from food, humans and chickens in Brazil in comparison to the North American Strains
- (2013) Fábio Campioni et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- AGP: A Multimethods Web Server for Alignment-Free Genome Phylogeny
- (2013) J. Cheng et al. MOLECULAR BIOLOGY AND EVOLUTION
- On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004
- (2013) Marc W. Allard et al. PLoS One
- CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics
- (2013) Tammi Vesth et al. PLoS One
- Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo
- (2013) Pimlapas Leekitcharoenphon et al. Journal of Infection in Developing Countries
- Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona
- (2013) Zhemin Zhou et al. PLoS Genetics
- snpTree - a web-server to identify and construct SNP trees from whole genome sequence data
- (2012) Pimlapas Leekitcharoenphon et al. BMC GENOMICS
- High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach
- (2012) Marc W Allard et al. BMC GENOMICS
- Genomic variation in Salmonella enterica core genes for epidemiological typing
- (2012) Pimlapas Leekitcharoenphon et al. BMC GENOMICS
- High-Resolution Single Nucleotide Polymorphism Analysis Distinguishes Recrudescence and Reinfection in Recurrent Invasive Nontyphoidal Salmonella Typhimurium Disease
- (2012) Chinyere K. Okoro et al. CLINICAL INFECTIOUS DISEASES
- Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory
- (2012) W. M. Dunne et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Molecular Characterization of Salmonella Enteritidis: Comparison of an Optimized Multi-Locus Variable-Number of Tandem Repeat Analysis (MLVA) and Pulsed-Field Gel Electrophoresis
- (2012) Isabelle Dewaele et al. Foodborne Pathogens and Disease
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Genome Sequences of Five Salmonella enterica Serovar Heidelberg Isolates Associated with a 2011 Multistate Outbreak in the United States
- (2012) M. Hoffmann et al. JOURNAL OF BACTERIOLOGY
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
- (2012) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
- (2012) Chinyere K Okoro et al. NATURE GENETICS
- Transforming clinical microbiology with bacterial genome sequencing
- (2012) Xavier Didelot et al. NATURE REVIEWS GENETICS
- Insights from Genomics into Bacterial Pathogen Populations
- (2012) Daniel J. Wilson PLoS Pathogens
- Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
- (2012) Claudio U. Köser et al. PLoS Pathogens
- Molecular Characterization of Salmonella Typhimurium Highly Successful Outbreak Strains
- (2011) Randi Føns Petersen et al. Foodborne Pathogens and Disease
- Characterization of Isolates of Salmonella enterica Serovar Stanley, a Serovar Endemic to Asia and Associated with Travel
- (2011) R. S. Hendriksen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The Salmonella enterica Pan-genome
- (2011) Annika Jacobsen et al. MICROBIAL ECOLOGY
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak
- (2011) R. S. Hendriksen et al. mBio
- The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones
- (2011) Santiago Castillo-Ramírez et al. PLoS Pathogens
- Simrank: Rapid and sensitive general-purpose k-mer search tool
- (2011) Todd Z DeSantis et al. BMC ECOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- High-throughput sequencing and clinical microbiology: progress, opportunities and challenges
- (2010) Mark J Pallen et al. CURRENT OPINION IN MICROBIOLOGY
- Genomic Characterization of Campylobacter jejuni Strain M1
- (2010) Carsten Friis et al. PLoS One
- Evolution of MRSA During Hospital Transmission and Intercontinental Spread
- (2010) S. R. Harris et al. SCIENCE
- Standard operating procedure for computing pangenome trees
- (2010) Lars Snipen et al. Standards in Genomic Sciences
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started