Gene expression variability - the other dimension in transcriptome analysis

Modulation of transcriptional burst frequency by histone acetylation

(2018) Damien Nicolas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Chemical Fluctuation Theorem governing gene expression

(2018) Seong Jun Park et al.   Nature Communications

Reduced expression of C/EBPβ-LIP extends health and lifespan in mice

(2018) Christine Müller et al.   eLife

Transcriptional speed bumps revealed in high resolution

(2018) Karen Adelman et al.   NATURE

Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort

(2017) Ana Viñuela et al.   HUMAN MOLECULAR GENETICS

Gene expression variability and the analysis of large-scale RNA-seq studies with the MDSeq

(2017) Di Ran et al.   NUCLEIC ACIDS RESEARCH

Links between DNA methylation and nucleosome occupancy in the human genome

(2017) Clayton K. Collings et al.   Epigenetics & Chromatin

Dynamics of RNA Polymerase II Pausing and Bivalent Histone H3 Methylation during Neuronal Differentiation in Brain Development

(2017) Jiancheng Liu et al.   Cell Reports

Phenotypic heterogeneity promotes adaptive evolution

(2017) Zoltán Bódi et al.   PLOS BIOLOGY

pathVar: a new method for pathway-based interpretation of gene expression variability

(2017) Laurence de Torrente et al.   PeerJ

Systematic Analysis of the Determinants of Gene Expression Noise in Embryonic Stem Cells

(2017) Andre J. Faure et al.   Cell Systems

A new view of transcriptome complexity and regulation through the lens of local splicing variations

(2016) Jorge Vaquero-Garcia et al.   eLife

Comprehensive transcriptional landscape of aging mouse liver

(2015) Ryan R. White et al.   BMC GENOMICS

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing

(2015) Takayuki Nojima et al.   CELL

Structure of silent transcription intervals and noise characteristics of mammalian genes

(2015) B. Zoller et al.   Molecular Systems Biology

Selection on noise constrains variation in a eukaryotic promoter

(2015) Brian P. H. Metzger et al.   NATURE

Structural basis of transcription initiation by RNA polymerase II

(2015) Sarah Sainsbury et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Getting up to speed with transcription elongation by RNA polymerase II

(2015) Iris Jonkers et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Circadian behavior is light-reprogrammed by plastic DNA methylation

(2014) Abdelhalim Azzi et al.   NATURE NEUROSCIENCE

Control of Transcriptional Elongation

(2013) Hojoong Kwak et al.   Annual Review of Genetics

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

Genetic Determinants and Cellular Constraints in Noisy Gene Expression

(2013) A. Sanchez et al.   SCIENCE

Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis

(2013) Teck Yew Low et al.   Cell Reports

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

(2012) Gregory Hannum et al.   MOLECULAR CELL

A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast

(2011) J. B. Zaugg et al.   GENOME RESEARCH

Estimation of alternative splicing variability in human populations

(2011) M. Gonzalez-Porta et al.   GENOME RESEARCH

Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

(2011) L. T. MacNeil et al.   GENOME RESEARCH

Nascent transcript sequencing visualizes transcription at nucleotide resolution

(2011) L. Stirling Churchman et al.   NATURE

Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics

(2011) D. M. Suter et al.   SCIENCE

Splicing-Dependent RNA Polymerase Pausing in Yeast

(2010) Ross D. Alexander et al.   MOLECULAR CELL

Variability in gene expression underlies incomplete penetrance

(2010) Arjun Raj et al.   NATURE

Non-genetic heterogeneity of cells in development: more than just noise

(2009) S. Huang   DEVELOPMENT

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL