Effect of Advanced HIV Infection on the Respiratory Microbiome

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

(2015) James M. Beck et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Initiation of Antiretroviral Therapy in Early Asymptomatic HIV Infection

(2015)   NEW ENGLAND JOURNAL OF MEDICINE

A Trial of Early Antiretrovirals and Isoniazid Preventive Therapy in Africa

(2015)   NEW ENGLAND JOURNAL OF MEDICINE

The Lung Microbiome of Ugandan HIV-Infected Pneumonia Patients Is Compositionally and Functionally Distinct from That of San Franciscan Patients

(2014) Shoko Iwai et al.   PLoS One

Cell-associated bacteria in the human lung microbiome

(2014) Robert P Dickson et al.   Microbiome

Widespread Colonization of the Lung byTropheryma whippleiin HIV Infection

(2013) Catherine Lozupone et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

(2013) Alison Morris et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Investigation of the Effect of Type 2 Diabetes Mellitus on Subgingival Plaque Microbiota by High-Throughput 16S rDNA Pyrosequencing

(2013) Mi Zhou et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise

(2013) Homer L Twigg et al.   Lancet Respiratory Medicine

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

(2013) Leopoldo N Segal et al.   Microbiome

The arthropod, but not the vertebrate host or its environment, dictates bacterial community composition of fleas and ticks

(2012) Hadas Hawlena et al.   ISME Journal

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

(2011) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

The airway microbiome in cystic fibrosis and implications for treatment

(2011) Edith T Zemanick et al.   CURRENT OPINION IN PEDIATRICS

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

(2011) John R. Erb-Downward et al.   PLoS One

HIV Infection and Risk for Incident Pulmonary Diseases in the Combination Antiretroviral Therapy Era

(2010) Kristina Crothers et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH