Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica

Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides

(2018) Bala Ani Akpinar et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant Small Non-coding RNAs and Their Roles in Biotic Stresses

(2018) Eleanor J. Brant et al.   Frontiers in Plant Science

Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

(2018) Mohammad Reza Ghaffari et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The contrasting microRNA content of a drought tolerant and a drought susceptible wheat cultivar

(2017) Behnam Bakhshi et al.   JOURNAL OF PLANT PHYSIOLOGY

MicroRNAs regulate the main events in rice drought stress response by manipulating the water supply to shoots

(2017) Ehsan Mohseni Fard et al.   Molecular BioSystems

Drought responsive microRNAs in two barley cultivars differing in their level of sensitivity to drought stress

(2017) Ehsan Mohseni Fard et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats

(2017) Halise Busra Cagirici et al.   Scientific Reports

An Insight into microRNA156 Role in Salinity Stress Responses of Alfalfa

(2017) Muhammad Arshad et al.   Frontiers in Plant Science

Abiotic stress miRNomes in the Triticeae

(2016) Burcu Alptekin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors

(2016) Burcu Alptekin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K + Transporter Gene HAK5 in Response to Low Potassium Stress

(2016) Shuai Zhao et al.   PLANT CELL

Metabolic and transcriptional response of central metabolism affected by root endophytic fungus Piriformospora indica under salinity in barley

(2016) Mohammad Reza Ghaffari et al.   PLANT MOLECULAR BIOLOGY

MicroRNA Signatures of Drought Signaling in Rice Root

(2016) Behnam Bakhshi et al.   PLoS One

Plant-endophyte symbiosis, an ecological perspective

(2015) Zahoor Ahmed Wani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress

(2015) Bala Ani Akpinar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

miR408 overexpression causes increased drought tolerance in chickpea

(2015) Mortaza Hajyzadeh et al.   GENE

Flavonoids modify root growth and modulate expression of SHORT-ROOT and HD-ZIP III

(2015) Danilo Miralha Franco et al.   JOURNAL OF PLANT PHYSIOLOGY

Isolation and functional characterization of salt-stress induced RCI2-like genes from Medicago sativa and Medicago truncatula

(2015) Ruicai Long et al.   JOURNAL OF PLANT RESEARCH

Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

(2015) Elham Faghani et al.   Journal of Proteomics

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

The endophytic fungusPiriformospora indicaprotects wheat from fusarium crown rot disease in simulated UK autumn conditions

(2015) M. Rabiey et al.   PLANT PATHOLOGY

Stress responsive miRNAs and isomiRs in cereals

(2015) Hikmet Budak et al.   PLANT SCIENCE

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

(2015) Bala Ani Akpinar et al.   Scientific Reports

Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice

(2015) Penggen Duan et al.   Nature Plants

Blocking miR396 increases rice yield by shaping inflorescence architecture

(2015) Feng Gao et al.   Nature Plants

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress

(2014) H. Budak et al.   Briefings in Functional Genomics

Effect of Piriformospora indica Inoculation on some Physiological Traits of Barley (Hordeum vulgare) Under Salt Stress

(2014) Mehdi Ghabooli   CHEMISTRY OF NATURAL COMPOUNDS

The abiotic stress-responsive NAC-type transcription factor SlNAC4 regulates salt and drought tolerance and stress-related genes in tomato (Solanum lycopersicum)

(2014) Mingku Zhu et al.   PLANT CELL REPORTS

The wheat NHX antiporter gene TaNHX2 confers salt tolerance in transgenic alfalfa by increasing the retention capacity of intracellular potassium

(2014) Yan-Min Zhang et al.   PLANT MOLECULAR BIOLOGY

Growth Promotion-Related miRNAs in Oncidium Orchid Roots Colonized by the Endophytic Fungus Piriformospora indica

(2014) Wei Ye et al.   PLoS One

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Physiology and proteome responses of two contrasting rice mutants and their wild type parent under salt stress conditions at the vegetative stage

(2013) Akram Ghaffari et al.   JOURNAL OF PLANT PHYSIOLOGY

Manipulating Root Water Supply Elicits Major Shifts in the Shoot Proteome

(2013) Mehdi Mirzaei et al.   JOURNAL OF PROTEOME RESEARCH

A proteomics approach to study the molecular basis of enhanced salt tolerance in barley (Hordeum vulgare L.) conferred by the root mutualistic fungus Piriformospora indica

(2013) Mehdi Alikhani et al.   Molecular BioSystems

Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.)

(2013) Jun Li et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Phytoplasma-Responsive microRNAs Modulate Hormonal, Nutritional, and Stress Signalling Pathways in Mexican Lime Trees

(2013) Farveh Ehya et al.   PLoS One

High-Throughput Sequencing and Degradome Analysis Identify miRNAs and Their Targets Involved in Fruit Senescence of Fragaria ananassa

(2013) Xiangbin Xu et al.   PLoS One

Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa

(2012) Ruibo Hu et al.   BMC PLANT BIOLOGY

EFFECTS OF SODIUM CHLORIDE ON PHYSIOLOGICAL ASPECTS OFSALICORNIA PERSICAGROWTH

(2012) Sara Tale Ahmad et al.   JOURNAL OF PLANT NUTRITION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

OsNAC5overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field

(2012) Jin Seo Jeong et al.   PLANT BIOTECHNOLOGY JOURNAL

Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice

(2012) K. Xie et al.   PLANT PHYSIOLOGY

Proteomic analysis of rice anthers under salt stress

(2012) Elham Sarhadi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Sulfur Assimilation in Photosynthetic Organisms: Molecular Functions and Regulations of Transporters and Assimilatory Enzymes

(2011) Hideki Takahashi et al.   Annual Review of Plant Biology

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress

(2011) Shi-Yong Song et al.   PLANTA

Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica

(2011) Alga Zuccaro et al.   PLoS Pathogens

Over-expression of a glutathione S-transferase gene, GsGST, from wild soybean (Glycine soja) enhances drought and salt tolerance in transgenic tobacco

(2010) Wei Ji et al.   BIOTECHNOLOGY LETTERS

High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism

(2010) Y. Meng et al.   JOURNAL OF EXPERIMENTAL BOTANY

The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice

(2010) Hironori Takasaki et al.   MOLECULAR GENETICS AND GENOMICS

The MicroRNA159-Regulated GAMYB-like Genes Inhibit Growth and Promote Programmed Cell Death in Arabidopsis

(2010) M. M. Alonso-Peral et al.   PLANT PHYSIOLOGY

Over-expression of osa-MIR396c decreases salt and alkali stress tolerance

(2010) Peng Gao et al.   PLANTA

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

Overexpression of glutathione S-transferase gene increases salt tolerance of arabidopsis

(2010) Y. C. Qi et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

Interactions between Pseudomonas putida UW4 and Gigaspora rosea BEG9 and their consequences for the growth of cucumber under salt-stress conditions

(2009) E. Gamalero et al.   JOURNAL OF APPLIED MICROBIOLOGY

Genotype-Dependent Differential Responses of Three Forage Species to Calcium Supplement in Saline Conditions

(2009) Nayer Azam Khosh Kholgh Sima et al.   JOURNAL OF PLANT NUTRITION

The Arabidopsis thaliana HAK5 K+ Transporter Is Required for Plant Growth and K+ Acquisition from Low K+ Solutions under Saline Conditions

(2009) Manuel Nieves-Cordones et al.   Molecular Plant

Arabidopsis SBP-Box Genes SPL10, SPL11 and SPL2 Control Morphological Change in Association with Shoot Maturation in the Reproductive Phase

(2009) Masahito Shikata et al.   PLANT AND CELL PHYSIOLOGY

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

(2009) M. Ghildiyal et al.   RNA

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types

(2008) Cintia Goulart Kawashima et al.   PLANT JOURNAL

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA