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Bloodstream infections in haematological cancer patients colonized by multidrug-resistant bacteria

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Regional variation limits applications of healthy gut microbiome reference ranges and disease models

(2018) Yan He et al.   NATURE MEDICINE

Gut Microbiota in Tibetan Herdsmen Reflects the Degree of Urbanization

(2018) Huan Li et al.   Frontiers in Microbiology

Dynamics of the human gut microbiome in inflammatory bowel disease

(2017) Jonas Halfvarson et al.   Nature Microbiology

Stress and stability: applying the Anna Karenina principle to animal microbiomes

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Fecal microbiota transplantation for patients with steroid-resistant acute graft-versus-host disease of the gut

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Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

(2016) Toshitaka Odamaki et al.   BMC MICROBIOLOGY

Gut microbiota and hematopoietic stem cell transplantation: where do we stand?

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Pathogenesis of acute graft-versus-host disease: from intestinal microbiota alterations to donor T cell activation

(2016) Robert Zeiser et al.   BRITISH JOURNAL OF HAEMATOLOGY

Gut microbiome–derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease

(2016) Nathan D Mathewson et al.   NATURE IMMUNOLOGY

Fusobacterium nucleatum-Induced Impairment of Autophagic Flux Enhances the Expression of Proinflammatory Cytokines via ROS in Caco-2 Cells

(2016) Bin Tang et al.   PLoS One

Microbiome mediation of infections in the cancer setting

(2016) Ying Taur et al.   Genome Medicine

Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

(2016) Kelly A. Shaw et al.   Genome Medicine

Intestinal Short Chain Fatty Acids and their Link with Diet and Human Health

(2016) David Ríos-Covián et al.   Frontiers in Microbiology

Intestinal Blautia Is Associated with Reduced Death from Graft-versus-Host Disease

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Fusobacterium nucleatum, inflammation, and immunity: the fire within human gut

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The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation

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Acute appendicitis in children is associated with an abundance of bacteria from the phylum Fusobacteria

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Persistent gut microbiota immaturity in malnourished Bangladeshi children

(2014) Sathish Subramanian et al.   NATURE

Intestinal Microbiota Containing Barnesiella Species Cures Vancomycin-Resistant Enterococcus faecium Colonization

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Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

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Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation

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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Invasive potential of gut mucosa-derived fusobacterium nucleatum positively correlates with IBD status of the host

(2011) Jaclyn Strauss et al.   INFLAMMATORY BOWEL DISEASES

Role of gut microbiota in graft-versus-host disease

(2011) Stephen Murphy et al.   LEUKEMIA & LYMPHOMA

A single-cell snapshot of gene expression in healthy and cancerous colon tissue

(2011) Katrina Ray   Nature Reviews Gastroenterology & Hepatology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans

(2010) Carles Ubeda et al.   JOURNAL OF CLINICAL INVESTIGATION

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

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QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Defining the Intensity of Conditioning Regimens: Working Definitions

(2009) Andrea Bacigalupo et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

Is 16S rDNA a Reliable Phylogenetic Marker to Characterize Relationships Below the Family Level in the Enterobacteriaceae?

(2008) Marianna Naum et al.   JOURNAL OF MOLECULAR EVOLUTION