Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis, immune and hypoxia related genes

Apoptosis and Clearance of Apoptotic Cells

(2018) Shigekazu Nagata   Annual Review of Immunology

Spermidine Protects against Oxidative Stress in Inflammation Models Using Macrophages and Zebrafish

(2018) Jin-Woo Jeong et al.   Biomolecules & Therapeutics

Expression analysis of immune genes in goldfish ( Carassius auratus ) infected with the monogenean parasite Gyrodactylus kobayashii

(2018) Shun Zhou et al.   FISH & SHELLFISH IMMUNOLOGY

Expression and functional characterization of transferrin in Nile tilapia ( Oreochromis niloticus ) in response to bacterial infection

(2018) Xiaoxue Yin et al.   FISH & SHELLFISH IMMUNOLOGY

Expression of immune-related genes of Nile tilapia Oreochromis niloticus after Gyrodactylus cichlidarum and Cichlidogyrus sclerosus infections demonstrating immunosupression in coinfection

(2018) Tingting Zhi et al.   FISH & SHELLFISH IMMUNOLOGY

Acute hypoxia stress induced abundant differential expression genes and alternative splicing events in heart of tilapia

(2018) Jun Hong Xia et al.   GENE

Immune-Related Transcriptional Responses to Parasitic Infection in a Naturally Inbred Fish: Roles of Genotype and Individual Variation

(2018) Rebecca Jane Pawluk et al.   Genome Biology and Evolution

Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review

(2018) Arun Sudhagar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Hypoxia-inducible transcription factors in fish: expression, function and interconnection with the circadian clock

(2018) Bernd Pelster et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Deletion of the fih gene encoding an inhibitor of hypoxia-inducible factors increases hypoxia tolerance in zebrafish

(2018) Wuhan Xiao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Regulation of proteasome assembly and activity in health and disease

(2018) Adrien Rousseau et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Hints on T cell responses in a fish-parasite model: Enteromyxum leei induces differential expression of T cell signature molecules depending on the organ and the infection status

(2018) M. Carla Piazzon et al.   Parasites & Vectors

Gene expression analysis of Atlantic salmon gills reveals mucin 5 and interleukin 4/13 as key molecules during amoebic gill disease

(2018) Mar Marcos-López et al.   Scientific Reports

Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals

(2018) Diego Robledo et al.   Frontiers in Genetics

Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

(2018) Amy R Ellison et al.   BMC GENOMICS

No evidence of local adaptation of immune responses to Gyrodactylus in three-spined stickleback ( Gasterosteus aculeatus )

(2017) Shaun Robertson et al.   FISH & SHELLFISH IMMUNOLOGY

Gene expression profiling of whole blood cells supports a more efficient mitochondrial respiration in hypoxia-challenged gilthead sea bream (Sparus aurata)

(2017) Juan Antonio Martos-Sitcha et al.   Frontiers in Zoology

Insights into the diversity of NOD-like receptors: Identification and expression analysis of NLRC3, NLRC5 and NLRX1 in rainbow trout

(2017) Claudio A. Álvarez et al.   MOLECULAR IMMUNOLOGY

The Reactome Pathway Knowledgebase

(2017) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

Under control: how a dietary additive can restore the gut microbiome and proteomic profile, and improve disease resilience in a marine teleostean fish fed vegetable diets

(2017) María Carla Piazzon et al.   Microbiome

Characterization and functional analysis of hypoxia-inducible factor HIF1α and its inhibitor HIF1αn in tilapia

(2017) Hong Lian Li et al.   PLoS One

Hypometabolism as the ultimate defence in stress response: how the comparative approach helps understanding of medically relevant questions

(2016) T. A. Gorr   Acta Physiologica

Characterization of Toll-like receptor gene expression in goldfish (Carassius auratus) during Dactylogyrus intermedius infection

(2016) Xiao Tu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Identification of Nod like receptor C3 (NLRC3) in Asian seabass, Lates calcarifer: Characterisation, ontogeny and expression analysis after experimental infection and ligand stimulation

(2016) Anutosh Paria et al.   FISH & SHELLFISH IMMUNOLOGY

Identification and characterization of a novel NOD-like receptor family CARD domain containing 3 gene in response to extracellular ATP stimulation and its role in regulating LPS-induced innate immune response in Japanese flounder (Paralichthys olivaceus) head kidney macrophages

(2016) Shuo Li et al.   FISH & SHELLFISH IMMUNOLOGY

RNA-seq analysis of early enteromyxosis in turbot (Scophthalmus maximus): new insights into parasite invasion and immune evasion strategies

(2016) Paolo Ronza et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Functions of Polyamines in Mammals

(2016) Anthony E. Pegg   JOURNAL OF BIOLOGICAL CHEMISTRY

ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization

(2016) Guangchuang Yu et al.   Molecular BioSystems

Use of formalin in intensive aquaculture: properties, application and effects on fish and water quality

(2016) Joana F. Leal et al.   Reviews in Aquaculture

The Mitogen-Activated Protein Kinase (MAPK) Pathway: Role in Immune Evasion by Trypanosomatids

(2016) Mercedes Soares-Silva et al.   Frontiers in Microbiology

Strong effect of long-term Sparicotyle chrysophrii infection on the cellular and innate immune responses of gilthead sea bream, Sparus aurata

(2015) M.A. Henry et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Dactylogyrus intermedius parasitism enhances Flavobacterium columnare invasion and alters immune-related gene expression in Carassius auratus

(2015) C Zhang et al.   DISEASES OF AQUATIC ORGANISMS

Recruitment of Factor H as a Novel Complement Evasion Strategy for Blood-StagePlasmodium falciparumInfection

(2015) Alexander T. Kennedy et al.   JOURNAL OF IMMUNOLOGY

RNA-seq analysis reveals significant transcriptome changes in turbot (Scophthalmus maximus) suffering severe enteromyxosis

(2015) Diego Robledo et al.   BMC GENOMICS

Interleukin gene expression is strongly modulated at the local level in a fish–parasite model

(2014) Gregorio Pérez-Cordón et al.   FISH & SHELLFISH IMMUNOLOGY

Response of rainbow trout (Oncorhynchus mykiss) in skin and fin tissue during infection with a variant of Gyrodactylus salaris (Monogenea: Gyrodactylidae)

(2014) Thomas R. Jorgensen et al.   FOLIA PARASITOLOGICA

Experimental transmission of Sparicotyle chrysophrii (Monogenea: Polyopisthocotylea) to gilthead seabream (Sparus aurata) and histopathology of the infection

(2014) Ariadna Sitja-Bobadilla et al.   FOLIA PARASITOLOGICA

Overexpressed NLRC3 Acts as an Anti-Inflammatory Cytosolic Protein

(2014) Yetiş Gültekin et al.   Journal of Innate Immunity

Diseases of cultured marine fishes caused by Platyhelminthes (Monogenea, Digenea, Cestoda)

(2014) K. OGAWA   PARASITOLOGY

Economic costs of protistan and metazoan parasites to global mariculture

(2014) A. P. SHINN et al.   PARASITOLOGY

Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts

(2013) Josep A Calduch-Giner et al.   BMC GENOMICS

Analysis of Stress-Responsive Transcriptome in the Intestine of Asian Seabass (Lates calcarifer) using RNA-Seq

(2013) J. H. Xia et al.   DNA RESEARCH

Transcriptional immune response of cage-cultured Pacific bluefin tuna during infection by two Cardicola blood fluke species

(2013) Mark Polinski et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular characterization and expression analysis of three hypoxia-inducible factor alpha subunits, HIF-1α, -2α and -3α in hypoxia-tolerant Indian catfish, Clarias batrachus [Linnaeus, 1758]

(2013) Vindhya Mohindra et al.   MOLECULAR BIOLOGY REPORTS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Dietary vegetable oils do not alter the intestine transcriptome of gilthead sea bream (Sparus aurata), but modulate the transcriptomic response to infection with Enteromyxum leei

(2012) Josep A Calduch-Giner et al.   BMC GENOMICS

Expression of immune-related genes in goldfish gills induced by Dactylogyrus intermedius infections

(2012) Cheng Lu et al.   FISH & SHELLFISH IMMUNOLOGY

Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis

(2012) Tobias L. Lenz et al.   MOLECULAR ECOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition

(2011) Tariku Markos Tadiso et al.   BMC GENOMICS

Mitogen-activated protein kinase phosphatase (MKP)-1 in immunology, physiology, and disease

(2011) Lyn M. Wancket et al.   LIFE SCIENCES

Iron metabolism and the innate immune response to infection

(2011) Erin E. Johnson et al.   MICROBES AND INFECTION

Autophagy in immunity and inflammation

(2011) Beth Levine et al.   NATURE

Immune-related genes expression profile in orange-spotted grouper during exposure to Cryptocaryon irritans

(2011) Y. W. LI et al.   PARASITE IMMUNOLOGY

A Butyrophilin Family Member Critically Inhibits T Cell Activation

(2010) T. Yamazaki et al.   JOURNAL OF IMMUNOLOGY

Apoptosis induced by parasitic diseases

(2010) Anne-Lise Bienvenu et al.   Parasites & Vectors

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Modes of p53 Regulation

(2009) Jan-Philipp Kruse et al.   CELL

Molecular and immunohistochemical studies on epidermal responses in Atlantic salmon Salmo salar L. induced by Gyrodactylus salaris Malmberg, 1957

(2009) P. W. Kania et al.   JOURNAL OF HELMINTHOLOGY

Helminth immunoregulation: The role of parasite secreted proteins in modulating host immunity

(2009) James P. Hewitson et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

BH3-only proteins in apoptosis and beyond: an overview

(2009) E Lomonosova et al.   ONCOGENE

Disruption of the Toxoplasma gondii Parasitophorous Vacuole by IFNγ-Inducible Immunity-Related GTPases (IRG Proteins) Triggers Necrotic Cell Death

(2009) Yang O. Zhao et al.   PLoS Pathogens

Subversion of complement by hematophagous parasites

(2008) Hélène Schroeder et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Dynamic expression of immune response genes in the sea bass, Dicentrarchus labrax, experimentally infected with the monogenean Diplectanum aequans

(2008) E FALIEX et al.   FISH & SHELLFISH IMMUNOLOGY

Histological, Histochemical and Morphometric Changes of Splenic Melanomacrophage Centers (Smmcs) in Sparicotyle-Infected Cultured Sea Breams (Sparus aurata)

(2008) G. De Vico et al.   IMMUNOPHARMACOLOGY AND IMMUNOTOXICOLOGY

Plasmodium yoelii sporozoites modulate cytokine profile and induce apoptosis in murine Kupffer cells

(2008) Christian Klotz et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY