Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa

A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

(2016) Amos A. Schaffer et al.   BMC GENOMICS

(Neo)blast from the past: new insights into planarian stem cell lineages

(2016) Shu Jun Zhu et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Neoblasts and the evolution of whole-body regeneration

(2016) Andrew R Gehrke et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

A gene regulatory network for apical organ neurogenesis and its spatial control in sea star embryos

(2016) Alys M. Cheatle Jarvela et al.   DEVELOPMENT

An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo

(2016) Francesca Rizzo et al.   DEVELOPMENTAL BIOLOGY

Head regeneration in hemichordates is not a strict recapitulation of development

(2016) Shawn M. Luttrell et al.   DEVELOPMENTAL DYNAMICS

Regeneration in bipinnaria larvae of the bat star Patiria miniata induces rapid and broad new gene expression

(2016) Nathalie Oulhen et al.   MECHANISMS OF DEVELOPMENT

Probing RNA recognition by human ADAR2 using a high-throughput mutagenesis method

(2016) Yuru Wang et al.   NUCLEIC ACIDS RESEARCH

Regulation of ERK-MAPK signaling in human epidermis

(2015) Joseph Cursons et al.   BMC Systems Biology

JNK signalling is necessary for a Wnt- and stem cell-dependent regeneration programme

(2015) B. Tejada-Romero et al.   DEVELOPMENT

Evolution of the chordate regeneration blastema: Differential gene expression and conserved role of notch signaling during siphon regeneration in the ascidian Ciona

(2015) Mayuko Hamada et al.   DEVELOPMENTAL BIOLOGY

Regeneration across Metazoan Phylogeny: Lessons from Model Organisms

(2015) Qiao Li et al.   Journal of Genetics and Genomics

Primary Cilia on Horizontal Basal Cells Regulate Regeneration of the Olfactory Epithelium

(2015) Ariell M. Joiner et al.   JOURNAL OF NEUROSCIENCE

A Comprehensive Transcriptomic and Proteomic Analysis of Hydra Head Regeneration

(2015) Hendrik O. Petersen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Calcium signaling in membrane repair

(2015) Xiping Cheng et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Tissue Regeneration and Biomineralization in Sea Urchins: Role of Notch Signaling and Presence of Stem Cell Markers

(2015) Helena C. Reinardy et al.   PLoS One

iTRAQ-Based Quantitative Proteomic Analysis of the Initiation of Head Regeneration in Planarians

(2015) Xiaofang Geng et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Initiating a regenerative response; cellular and molecular features of wound healing in the cnidarian Nematostella vectensis

(2014) Timothy Q DuBuc et al.   BMC BIOLOGY

Transcriptomic changes during regeneration of the central nervous system in an echinoderm

(2014) Vladimir S Mashanov et al.   BMC GENOMICS

Expression of pluripotency factors in echinoderm regeneration

(2014) Vladimir S. Mashanov et al.   CELL AND TISSUE RESEARCH

Dose-dependent nuclear  -catenin response segregates endomesoderm along the sea star primary axis

(2014) B. S. McCauley et al.   DEVELOPMENT

Closing the wounds: One hundred and twenty five years of regenerative biology in the ascidianCiona intestinalis

(2014) William R. Jeffery   GENESIS

Injury-induced immune responses in Hydra

(2014) Yvan Wenger et al.   SEMINARS IN IMMUNOLOGY

JNK Controls the Onset of Mitosis in Planarian Stem Cells and Triggers Apoptotic Cell Death Required for Regeneration and Remodeling

(2014) María Almuedo-Castillo et al.   PLoS Genetics

Homeobox Genes Expressed During Echinoderm Arm Regeneration

(2013) Yousra Ben Khadra et al.   BIOCHEMICAL GENETICS

Radial glial cells play a key role in echinoderm neural regeneration

(2013) Vladimir S Mashanov et al.   BMC BIOLOGY

The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios

(2013) Damian Kao et al.   BMC GENOMICS

Tumor suppressors: enhancers or suppressors of regeneration?

(2013) J. H. Pomerantz et al.   DEVELOPMENT

Expression of wnt and frizzled genes during early sea star development

(2013) Brenna S. McCauley et al.   GENE EXPRESSION PATTERNS

Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis

(2013) Anna Czarkwiani et al.   GENE EXPRESSION PATTERNS

In VivoEpithelial Wound Repair Requires Mobilization of Endogenous Intracellular and Extracellular Calcium

(2013) Eitaro Aihara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reactivating head regrowth in a regeneration-deficient planarian species

(2013) S.-Y. Liu et al.   NATURE

The molecular logic for planarian regeneration along the anterior–posterior axis

(2013) Yoshihiko Umesono et al.   NATURE

Restoration of anterior regeneration in a planarian with limited regenerative ability

(2013) James M. Sikes et al.   NATURE

RNA-Seq Reveals Dynamic Changes of Gene Expression in Key Stages of Intestine Regeneration in the Sea Cucumber Apostichopus japonicas

(2013) Lina Sun et al.   PLoS One

Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning

(2013) K. A. Yankura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Stem cell dynamics in Cnidaria: are there unifying principles?

(2012) David A. Gold et al.   DEVELOPMENT GENES AND EVOLUTION

A molecular wound response program associated with regeneration initiation in planarians

(2012) D. Wenemoser et al.   GENES & DEVELOPMENT

Interstitial stem cells in Hydra: multipotency and decision-making

(2012) Charles N. David   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Hydra, a fruitful model system for 270 years

(2012) Brigitte Galliot   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Early redox, Src family kinase, and calcium signaling integrate wound responses and tissue regeneration in zebrafish

(2012) Sa Kan Yoo et al.   JOURNAL OF CELL BIOLOGY

Transcriptome pyrosequencing of the Antarctic brittle star Ophionotus victoriae

(2012) Gavin Burns et al.   Marine Genomics

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

FoxO is a critical regulator of stem cell maintenance in immortal Hydra

(2012) A.-M. Boehm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nerve dependence in tissue, organ, and appendage regeneration

(2012) Anoop Kumar et al.   TRENDS IN NEUROSCIENCES

The history and enduring contributions of planarians to the study of animal regeneration

(2012) Sarah A. Elliott et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms

(2011) Kristen A Yankura et al.   BMC BIOLOGY

ERK signaling controls blastema cell differentiation during planarian regeneration

(2011) J. Tasaki et al.   DEVELOPMENT

Role of c-Jun N-terminal kinase activation in blastema formation during planarian regeneration

(2011) Junichi Tasaki et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Expression of Wnt9, TCTP, and Bmp1/Tll in sea cucumber visceral regeneration

(2011) Vladimir S. Mashanov et al.   GENE EXPRESSION PATTERNS

Role of Vasa, Piwi, and Myc-expressing coelomic cells in gonad regeneration of the colonial tunicate, Botryllus primigenus

(2011) Kaz Kawamura et al.   MECHANISMS OF DEVELOPMENT

Vertebrate-like regeneration in the invertebrate chordate amphioxus

(2011) I. M. L. Somorjai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clonogenic Neoblasts Are Pluripotent Adult Stem Cells That Underlie Planarian Regeneration

(2011) D. E. Wagner et al.   SCIENCE

Visceral regeneration in a sea cucumber involves extensive expression of survivin and mortalin homologs in the mesothelium

(2010) Vladimir S Mashanov et al.   BMC DEVELOPMENTAL BIOLOGY

Possibility of mixed progenitor cells in sea star arm regeneration

(2010) Bodil Hernroth et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

FoxO and Stress Responses in the Cnidarian Hydra vulgaris

(2010) Diane Bridge et al.   PLoS One

The zebrafish foxj1a transcription factor regulates cilia function in response to injury and epithelial stretch

(2010) N. E. Hellman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Gene expression profiling of intestinal regeneration in the sea cucumber

(2009) Pablo A Ortiz-Pineda et al.   BMC GENOMICS

Cell death and tissue remodeling in planarian regeneration

(2009) Jason Pellettieri et al.   DEVELOPMENTAL BIOLOGY

Apoptotic Cells Provide an Unexpected Source of Wnt3 Signaling to Drive Hydra Head Regeneration

(2009) Simona Chera et al.   DEVELOPMENTAL CELL

Evolution of animal regeneration: re-emergence of a field

(2009) Alexandra E. Bely et al.   TRENDS IN ECOLOGY & EVOLUTION

Anterior regeneration in the hemichordatePtychodera flava

(2008) Amanda L. Rychel et al.   DEVELOPMENTAL DYNAMICS

Planarian PTEN homologs regulate stem cells and regeneration through TOR signaling

(2008) N. J. Oviedo et al.   Disease Models & Mechanisms